LOCUS       NZ_CP137235             2683 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Proteus mirabilis strain PM65 plasmid pPM65-NDM_124k, complete
            sequence.
ACCESSION   NZ_CP137235
VERSION     NZ_CP137235.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37935508
            Assembly: GCF_033170545.1
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Li,X.
  TITLE     Proteus mirabilis PM65 Genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Li,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) Laboratory Medicine Center, Department of
            Clinical Laboratory, Zhejiang Provincial People's Hospital
            (Affiliated People's Hospital, Hangzhou Medical College), Shangtang
            road, Hangzhou 310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 10:06:59
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,881
            CDSs (total)                      :: 3,772
            Genes (coding)                    :: 3,697
            CDSs (with protein)               :: 3,697
            Genes (RNA)                       :: 109
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 75
            CDSs (without protein)            :: 75
            Pseudo Genes (ambiguous residues) :: 0 of 75
            Pseudo Genes (frameshifted)       :: 19 of 75
            Pseudo Genes (incomplete)         :: 56 of 75
            Pseudo Genes (internal stop)      :: 15 of 75
            Pseudo Genes (multiple problems)  :: 11 of 75
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP137235.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="PM65"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /plasmid="pPM65-NDM_124k"
                     /geo_loc_name="China:Hangzhou"
                     /lat_lon="29.86 N 121.56 E"
                     /collected_by="Longjie Zhou"
     gene            complement(361..1005)
                     /locus_tag="R5P62_RS19395"
                     /old_locus_tag="R5P62_19395"
     CDS             complement(361..1005)
                     /locus_tag="R5P62_RS19395"
                     /old_locus_tag="R5P62_19395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     gene            complement(1966..2406)
                     /locus_tag="R5P62_RS19400"
                     /old_locus_tag="R5P62_19400"
     CDS             complement(1966..2406)
                     /locus_tag="R5P62_RS19400"
                     /old_locus_tag="R5P62_19400"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     ARG             complement(365..1005)
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(1100..1255)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 taacccaaat gcaccacttg attgactcgg acttagcccg gtctccgaaa ggataaacag
       61 gcaaattgtg gtagtaaaac gtaccggaaa acgaaattcc ggctctacct ccgaatcacg
      121 ctgcggtatc gaaagattac agtgcgtacc tgataagagc accaatcaac ggactaggga
      181 tttcttggat tgcgaagtgt cgaaagaagc ccaacctaac caaacttagc cagattaacg
      241 agctaagaga ccatgaccca ataactgatc atggagaaaa gcaaagacaa gatgaagatg
      301 tcgcttcgct ccgttttgat tagtaccaca ttggggcatt aggcgttttt tacctagatt
      361 ttatcggtga acaataacac ctaaactctc aacaagctga agcgcctgct ctccatccaa
      421 cttcactcca tctaaattaa ttcgccttgc atcaagctcg ccaagcgccc cacccgttaa
      481 atcacaacca gtaaaatcag ccaaagacca atcaaacgat gaaaactccc cacaagaaag
      541 atcggagcca cgaaacacgg cgccagttat cacagtgcca ttccagcgat tttcccacag
      601 ttcgcacttt tctaatatga ctctagaaaa attagcgtaa ctaagatttg tcttggttat
      661 ataagcacta caaaaccatg accttgtagt tatcatattc ataaaattag cccctcgaaa
      721 atcagctcct tgagctaaac actcactaat ttcaagacct aaggcgctaa tgtttttaaa
      781 attactcatt gataaatcgc agcttttaaa gctagcgttt tttagtttgg ctctattaaa
      841 atcacaccct tccaagctat tcctgtcgta aaaactacaa tcaacaaatt cagtatcagt
      901 taaatcaacc cctgaaaaat cacaatttga aaaggcaata tttttaactc tattccccgt
      961 aaattgatct cgtgaaaact tttcattgat aaagtgcttt tccatacatg ctacacctgg
     1021 ttatttatac agtgcaatca ttgtacatta atttgaacaa ccttaaactc tagctaaaat
     1081 tgattcatac aatccctttt atgttaaacg ggcgagttag ttagcaaaaa cctcccgttc
     1141 atccccatta aagcccctcg aaacgatttt aagacacgat caccctataa aacacccaaa
     1201 tctacgctga aagtttagaa cggttttgcg ggcttctgag tgcgttttta acatcgtgca
     1261 aactgacaag taaaacgatg cgaaatcgct gaaagtcaca aacttgtttt gtggcaagaa
     1321 gcgatttgac caaccgagta aaacgagggc ggtaggcttt ttgtttttat cctgatgagc
     1381 gtccagcgaa gaaagggaaa aacaggggga gccgaaacga aatgacacgc cccagcgatg
     1441 gcaagtgaac cccagtgaac gtgtttcgtt ttgggggcaa agccccccgt caagcgaagc
     1501 gtctgaccac cacatttttg agcgaccaaa tacaggggcg aaaaaagggg gtggtcagac
     1561 gaacgcagtg agtttgacgg gcttgggtga atggtttttt tcgcaggcgt ccagccgaag
     1621 aaaatagcca gagggcggag ccttatgtca ttcattttcg tccagaaaat gagtggcatt
     1681 gatactgaaa gtatcatggg gtgcaagtta gtaaaactat gattctaccc attatttcac
     1741 ccgttattct gcccgttata cctaaattgg gtgcaataac gggtaaagta ataggtagaa
     1801 taacaggtgg attaatgggt aagaaataac acaacgtcat cttgtgtcta tctattattc
     1861 tgtatcttat tctatgtatt attctaccta ttacagacga aatagataaa ataagagata
     1921 gaataataga taggataata cataaaataa taggtaaacc taacgtcagc gcaccttttc
     1981 ttcgagctgt tttagcatcg aaatatcacc taataaccgt tgatttttac ctgtgaaaaa
     2041 gatgatcgga ctgacatttg cattatcaat acttcggctt aactgaattc ccatcgcctg
     2101 ataatcatca tcgtttgtgc aatggtataa cgctaaaaca agctgacatt gttctggagt
     2161 tccgcattct attgcccagc ggatcaactc cgaaaaggtc aatccgttcg gtttccagtg
     2221 ttttttatgc cgtgacgcta acgccttaaa tttttcacgc ccttgattat atttttctgc
     2281 cccgatcacc ggatcttcac aacgaacccc ttgaaccggt cgcttatcaa atgacaattc
     2341 ccataaattt aattcttcga tgtattcgta atcttctggc gatgccaaac gaaataattg
     2401 agacatagag acaccctccg atcatgtgtg aacggagaca gtataaggct ttcgagaaat
     2461 tccgcttcct cgacgtgaaa caagttcacg ccttgcggcg agcgttgcga attgaattta
     2521 tgaggtttac caagctccag atgtaacaaa gccccgtgac agcatcacag ggctctggta
     2581 ctctaaatct tgtgcattcg ttgctcagat tagacgtcgc aatccaatct tagcaacgtg
     2641 agaggcgctt gtcacgttct cattaaatac cagccaacga cat
//
