LOCUS       NZ_CP137086             4223 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Proteus mirabilis strain PM14 plasmid pPM14-2, complete sequence.
ACCESSION   NZ_CP137086
VERSION     NZ_CP137086.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37867222
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 4223)
  AUTHORS   Li,X.
  TITLE     Proteus mirabilis PM14 Genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4223)
  AUTHORS   Li,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2023) Laboratory Medicine Center, Department of
            Clinical Laboratory, Zhejiang Provincial People's Hospital
            (Affiliated People's Hospital, Hangzhou Medical College), Shangtang
            road, Hangzhou 310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.8
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 200.0x
            Sequencing Technology        :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 01/24/2024 09:57:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 5
            CDSs (total)                 :: 5
            Genes (coding)               :: 5
            CDSs (with protein)          :: 5
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP137086.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4223
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="PM14"
                     /isolation_source="excrement"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /plasmid="pPM14-2"
                     /geo_loc_name="China:Hangzhou"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2017-10-29"
                     /collected_by="Longjie Zhou"
     gene            join(4135..4223,1..355)
                     /locus_tag="R2B79_RS00005"
     CDS             join(4135..4223,1..355)
                     /locus_tag="R2B79_RS00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_252501576.1"
                     /translation="MILSVSMPLIFWTKMNDIRLRPLAIFFGWTPAKKAIHPSPSNSLR
                     SSDHPLFSPLYLVAQKCGGQTLRLTGGFAPKTKHVHWGSLAIAGACHFVSAPPVFPFLR
                     WTLIRIKTKSLPPSFYSVGQIASCHKTSLCLSAISHHFTCQFE"
                     /name="hypothetical protein"
     gene            complement(535..1059)
                     /locus_tag="R2B79_RS00010"
                     /old_locus_tag="R2B79_19350"
     CDS             complement(535..1059)
                     /locus_tag="R2B79_RS00010"
                     /old_locus_tag="R2B79_19350"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113421941.1"
                     /translation="MLNKLRAFFSPKSPQPQQSGKESFILTDNEVIAVKYAHNLITTQM
                     LMGDVFKEGGKEYVFSEDKYVTPWVIGYLAGILDYSIQSTGAGEHARFELQQFFIHLHF
                     SSALREKVDVVDLICHSDMSGKDTGGFCPDYGKDYIAGAQAGFNTPPSAERDTPKLELY
                     WYLSNNCNPRS"
                     /name="hypothetical protein"
     gene            complement(1983..2180)
                     /locus_tag="R2B79_RS00015"
                     /old_locus_tag="R2B79_19355"
     CDS             complement(1983..2180)
                     /locus_tag="R2B79_RS00015"
                     /old_locus_tag="R2B79_19355"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113421954.1"
                     /translation="MIEKIKSFMTEHPKATTNELLDHIYDEIMELKKQGKSWSSIMDEI
                     SHSGFYVSETPFYKFIKSKK"
                     /name="hypothetical protein"
     gene            2428..2811
                     /locus_tag="R2B79_RS00020"
                     /old_locus_tag="R2B79_19360"
     CDS             2428..2811
                     /locus_tag="R2B79_RS00020"
                     /old_locus_tag="R2B79_19360"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113421955.1"
                     /translation="MFFYRFITLIFGAVYIATTLTLGESALSSSLYAIGIAKTPSSASG
                     ILTLLLMLWVLVVSVMMPKSWKVFAGIYLCLGLSGFLMPKSMHYGAGVYPLINSLTLLS
                     YLAFTLAIKLRDKHISKINQKTA"
                     /name="hypothetical protein"
     gene            3426..3866
                     /locus_tag="R2B79_RS00025"
                     /old_locus_tag="R2B79_19365"
     CDS             3426..3866
                     /locus_tag="R2B79_RS00025"
                     /old_locus_tag="R2B79_19365"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_113421940.1"
                     /translation="MSQLFRLASPADYEYIEEIKLWELSFDKRPVQGVRCEDPVIGAEK
                     YNRGREKFKALASRHKKRWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSSIIFFTGKNQRLLGDVSMLKQLEEKVR"
                     /name="hypothetical protein"
     Typing          355..510
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 gcctgcgaaa aaagccattc acccaagccc gtcaaactca ctgcgttcgt ctgaccaccc
       61 ccttttttcg cccctgtatt tggtcgctca aaaatgtggt ggtcagacgc ttcgcttgac
      121 ggggggcttt gcccccaaaa cgaaacacgt tcactggggt tcacttgcca tcgctggggc
      181 gtgtcatttc gtttcggctc cccctgtttt tccctttctt cgctggacgc tcatcaggat
      241 aaaaacaaaa agcctaccgc cctcgtttta ctcggttggt caaatcgctt cttgccacaa
      301 aacaagtttg tgtctttcag cgatttcgca tcattttact tgtcagtttg aatgatgtta
      361 aaaacgcact cagaagctcg caaaaccgtt ctaaactttc agcgtagatt tgggtgtttt
      421 atagggtgat agtgtcttaa aatcgttttg aggggcttta atggggatga acgggcggtt
      481 ttcgctaacc aactcgcccg tttaacataa aagggattag aggaaccatt tatattaaga
      541 tctaggattg caattattgg ataagtacca gtacaactct agttttgggg tgtctctttc
      601 tgcacttggt ggggtgttaa atccggcttg tgctcctgca atgtagtctt ttccatagtc
      661 tgggcaaaat ccgccagtat cttttcctga catatctgaa tgacaaatta aatctaccac
      721 atcgactttt tctcttaatg cggaagaaaa atgaaggtgg atgaaaaatt gctgcaattc
      781 gaatctggca tgttcaccag ccccagttga ttggatacta taatcaagaa tacccgctaa
      841 gtaacctatt acccacggtg ttacatattt atcttcacta aagacatact cttttccccc
      901 ttctttgaat acatctccca taagcatctg agtcgttata aggttatggg catacttaac
      961 agctataact tcattatctg taaggataaa actttctttt cctgactgtt gaggttgtgg
     1021 tgatttaggg gaaaaaaaag ctcgtaattt atttagcatt gctcaccttg tctggttcta
     1081 accggtatta ttttttctat gggcaataat atcccatatg ccccaatgtg gtactaatca
     1141 aaatggagcg aagcgacatc gtcatgctgt ctttgctttt ctccatgatc ggtgattggg
     1201 tcatggcttc ttagctagtt aagctagcta agtctggtta ggttgggctt ctttcgacgg
     1261 tgcaatccaa gaaatcccta gtccgttgat tggtgctctt atcaggtacg cactgtaatc
     1321 tttcgatacc gcagcgtgat tcggaggcag agccggaatt tcgttttccg gtacgtttta
     1381 ctaccacaat ttgcctgttt atcctttcgg agaccgggct aagtccgagt caatcaagtg
     1441 gtgcatttga gttaatgtcg ttgaatggtt ttaaggaagt cgtgacaagc gagcttccca
     1501 ttgttaagat tggattgtct aggtctgatc ttagcaacga atgcaccgaa tcagattagc
     1561 agagccgaag tgatgtcaca atcatttcgg ctctgtgcct tctggagtat cacaaaaaat
     1621 ttcaccgtat ttcaatccgc aacgctcgcc acaagatgaa aatttatttt tcatcgagga
     1681 agcctcacaa aagtaaaaaa aaacgggtca taacatttgg acaaaaaaca aagcttatat
     1741 cagataattt gattcccata agacccatta tgttaaacgg gcgagtttac acctcaaaac
     1801 cgcccgttag acgcgctcag aacgtctaca atcgatttta agcacccaac tcaccccata
     1861 acacccaaat ccatgctgaa agtttagaac ggtttctgtg cctttctagt gcatttttaa
     1921 caatgtttta tttcaggtga aatcattaac gtaaggctta aaacaatcca tatttataat
     1981 tgttattttt tacttttgat aaatttataa aacggggttt cactaacgta aaaaccagag
     2041 tggctgattt catccatgat gctagaccaa cttttacctt gtttttttaa ttccataatc
     2101 tcgtcataga tgtgatcgag gagctcattt gttgtcgctt taggatgctc ggtcataaaa
     2161 ctttttattt tttcaatcat tctactgcct tgatttttgg ctgatattta attaactctg
     2221 tcaattatag agcactaaat taacggaatc atgaaaaatt tcttattttt ttaaagtgat
     2281 atagcgtaat gagatgaaaa aatagaaagg gtagataatg atggatgtaa aacgccacac
     2341 aagagacttg tagcgtttaa cataaaaggg attagaagaa cctattttca tgtaaaatct
     2401 acaattattt aatgtggacg ggctattatg tttttctatc gatttatcac tttaattttt
     2461 ggggcagtgt atattgctac aactctaaca ttgggagagt cggcgttatc ctcttcgctt
     2521 tatgcaatag ggattgctaa aacccctagc tccgcttctg gtattttgac tcttttgttg
     2581 atgttgtggg ttttagttgt ttcggtcatg atgcctaaat cttggaaagt ttttgctggc
     2641 atttatctat gcttgggttt gtctgggttc cttatgccga aaagcatgca ttatggtgcc
     2701 ggtgtttacc cattgataaa ctctttaaca cttcttagtt atctggcttt tacccttgca
     2761 ataaagctaa gagacaaaca catctccaaa ataaatcaaa aaaccgccta atgccccaat
     2821 gtggtactaa tcaaaacgga gcgaagcgac aacgactttt tgtctttgct tttctccatg
     2881 attagttatt gggtcatggc ttctcagctg gcgtatttag ctaagtctga ttaggttggg
     2941 cttctttcga cggtgcaatc caagaaatcc ctagtccgtt gattggtgct cttatcaggt
     3001 acgcactgta atctttcgat accgcagcgt gattcggagg cagagccgga atttcgtttt
     3061 ccggtacgtt ttactaccac aatttgcctg tttatccttt cggagaccgg gctaagtccg
     3121 agtcaatcaa gtggtgcatt tgatttaatg tcgttgaatg gttttaagga agtagtgaca
     3181 agctagcttc ccattgctaa gattggatta ccacatcgaa atctttagca atgaatgcac
     3241 aagatttaga gtaccagagc cccatgaccc tgtcacgggg ctttgttaca tctgaagcct
     3301 aataacttct gtaaattcaa ctcgcaacgc tcgccgcaag gcgtgaactt gtttcgcgtc
     3361 gaggaagcgg aatttcccga aagccttata atatctccgt tcacacatca tcggagggga
     3421 tcactatgtc tcaattattt cgtttggcat caccggcaga ttacgaatac atcgaagaaa
     3481 taaaattatg ggaattgtca tttgataagc gaccggttca aggggttcgt tgtgaagatc
     3541 cggtgatcgg ggcagaaaaa tacaatcgag ggcgtgaaaa atttaaggcg ttagcatcac
     3601 ggcataaaaa acgctggaaa ccgaacggat tgaccttttc agagttgatc cgctgggcaa
     3661 tagagtgcgg aacccccgaa caatgtcagc ttgttttagc gttatatcat tgtacgaacg
     3721 atgacgatta tcaggcgatg ggaattcagt taagccgaag tattgataat gcaaatgtca
     3781 gctcgatcat ctttttcacc ggtaaaaatc aacgattatt aggtgatgtt tcgatgctta
     3841 aacagctcga agaaaaggtg cgctgacgtt aggtttacct attattttat gtattatcct
     3901 atctattatt ctatctctta ttttatctat ttcgtctgta ataggtagaa taatacatag
     3961 aataagatac agaataagag atagacacaa gatgacgttg tgttatttct tacccattaa
     4021 tctacccgtt attctaccca ttactttacc cgttatttca cccgatttag gtgtaacggg
     4081 taaagtaatg ggtaaaataa cgagtggaat catagtttta ctaacttaca ccccatgata
     4141 ctttcagtat caatgccact cattttctgg acgaaaatga atgacataag gctccgccct
     4201 ctggctattt tcttcggctg gac
//
