LOCUS       NZ_CP137084             2683 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Proteus mirabilis strain PM14 plasmid pPM14-3, complete sequence.
ACCESSION   NZ_CP137084
VERSION     NZ_CP137084.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37867222
KEYWORDS    RefSeq.
SOURCE      Proteus mirabilis
  ORGANISM  Proteus mirabilis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Proteus.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Li,X.
  TITLE     Proteus mirabilis PM14 Genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Li,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-OCT-2023) Laboratory Medicine Center, Department of
            Clinical Laboratory, Zhejiang Provincial People's Hospital
            (Affiliated People's Hospital, Hangzhou Medical College), Shangtang
            road, Hangzhou 310014, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: Unicycler v. v0.4.8
            Genome Representation        :: Full
            Expected Final Version       :: Yes
            Genome Coverage              :: 200.0x
            Sequencing Technology        :: Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 01/24/2024 09:49:26
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP137084.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Proteus mirabilis"
                     /mol_type="genomic DNA"
                     /strain="PM14"
                     /isolation_source="excrement"
                     /host="Homo sapiens"
                     /db_xref="taxon:584"
                     /plasmid="pPM14-3"
                     /geo_loc_name="China:Hangzhou"
                     /lat_lon="29.86 N 121.56 E"
                     /collection_date="2017-10-29"
                     /collected_by="Longjie Zhou"
     gene            join(2496..2683,1..253)
                     /locus_tag="R2B79_RS00005"
                     /old_locus_tag="R2B79_00005"
     CDS             join(2496..2683,1..253)
                     /locus_tag="R2B79_RS00005"
                     /old_locus_tag="R2B79_00005"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            1214..1858
                     /locus_tag="R2B79_RS00010"
                     /old_locus_tag="R2B79_00010"
     CDS             1214..1858
                     /locus_tag="R2B79_RS00010"
                     /old_locus_tag="R2B79_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             1215..1855
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          965..1120
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 ctggaaaccg aacggattga ccttttcgga gttgatccgc tgggcaatag aatgcggaac
       61 tccagaacaa tgtcagcttg ttttagcgtt ataccattgc acaaacgatg atgattatca
      121 ggcgatggga attcagttaa gccgaagtat tgataatgca aatgtcagtc cgatcatctt
      181 tttcacaggt aaaaatcaac ggttattagg tgatatttcg atgctaaaac agctcgaaga
      241 aaaggtgcgc tgacgttagg tttacctatt attttatgta ttatcctatc tattattcta
      301 tctcttattt tatctatttc gtctgtaata ggtagaataa tacatagaat aagatacaga
      361 ataatagata gacacaagat gacgttgtgt tatttcttac ccattaatcc acctgttatt
      421 ctacctatta ctttacccgt tattgcaccc aatttaggta taacgggcag aataacgggt
      481 gaaataatgg gtagaatcat agttttacta acttgcaccc catgatactt tcagtatcaa
      541 tgccactcat tttctggacg aaaatgaatg acataaggct ccgccctctg gctattttct
      601 tcggctggac gcctgcgaaa aaaaccattc acccaagccc gtcaaactca ctgcgttcgt
      661 ctgaccaccc ccttttttcg cccctgtatt tggtcgctca aaaatgtggt ggtcagacgc
      721 ttcgcttgac ggggggcttt gcccccaaaa cgaaacacgt tcactggggt tcacttgcca
      781 tcgctggggc gtgtcatttc gtttcggctc cccctgtttt tccctttctt cgctggacgc
      841 tcatcaggat aaaaacaaaa agcctaccgc cctcgtttta ctcggttggt caaatcgctt
      901 cttgccacaa aacaagtttg tgactttcag cgatttcgca tcgttttact tgtcagtttg
      961 cacgatgtta aaaacgcact cagaagcccg caaaaccgtt ctaaactttc agcgtagatt
     1021 tgggtgtttt atagggtgat cgtgtcttaa aatcgtttcg aggggcttta atggggatga
     1081 acgggaggtt tttgctaact aactcgcccg tttaacataa aagggattgt atgaatcaat
     1141 tttagctaga gtttaaggtt gttcaaatta atgtacaatg attgcactgt ataaataacc
     1201 aggtgtagca tgtatggaaa agcactttat caatgaaaag ttttcacgag atcaatttac
     1261 ggggaataga gttaaaaata ttgccttttc aaattgtgat ttttcagggg ttgatttaac
     1321 tgatactgaa tttgttgatt gtagttttta cgacaggaat agcttggaag ggtgtgattt
     1381 taatagagcc aaactaaaaa acgctagctt taaaagctgc gatttatcaa tgagtaattt
     1441 taaaaacatt agcgccttag gtcttgaaat tagtgagtgt ttagctcaag gagctgattt
     1501 tcgaggggct aattttatga atatgataac tacaaggtca tggttttgta gtgcttatat
     1561 aaccaagaca aatcttagtt acgctaattt ttctagagtc atattagaaa agtgcgaact
     1621 gtgggaaaat cgctggaatg gcactgtgat aactggcgcc gtgtttcgtg gctccgatct
     1681 ttcttgtggg gagttttcat cgtttgattg gtctttggct gattttactg gttgtgattt
     1741 aacgggtggg gcgcttggcg agcttgatgc aaggcgaatt aatttagatg gagtgaagtt
     1801 ggatggagag caggcgcttc agcttgttga gagtttaggt gttattgttc accgataaaa
     1861 tctaggtaaa aaacgcctaa tgccccaatg tggtactaat caaaacggag cgaagcgaca
     1921 tcttcatctt gtctttgctt ttctccatga tcagttattg ggtcatggtc tcttagctcg
     1981 ttaatctggc taagtttggt taggttgggc ttctttcgac acttcgcaat ccaagaaatc
     2041 cctagtccgt tgattggtgc tcttatcagg tacgcactgt aatctttcga taccgcagcg
     2101 tgattcggag gtagagccgg aatttcgttt tccggtacgt tttactacca caatttgcct
     2161 gtttatcctt tcggagaccg ggctaagtcc gagtcaatca agtggtgcat ttgggttaat
     2221 gtcgttggct ggtatttaat gagaacgtga caagcgcctc tcacgttgct aagattggat
     2281 tgcgacgtct aatctgagca acgaatgcac aagatttaga gtaccagagc cctgtgatgc
     2341 tgtcacgggg ctttgttaca tctggagctt ggtaaacctc ataaattcaa ttcgcaacgc
     2401 tcgccgcaag gcgtgaactt gtttcacgtc gaggaagcgg aatttctcga aagccttata
     2461 ctgtctccgt tcacacatga tcggagggtg tctctatgtc tcaattattt cgtttggcat
     2521 cgccagaaga ttacgaatac atcgaagaat taaatttatg ggaattgtca tttgataagc
     2581 gaccggttca aggggttcgt tgtgaagatc cggtgatcgg ggcagaaaaa tataatcaag
     2641 ggcgtgaaaa atttaaggcg ttagcgtcac ggcataaaaa aca
//
