LOCUS       NZ_CP135992             2428 bp    DNA     circular CON 03-MAR-2024
DEFINITION  Providencia zhijiangensis strain D4759 plasmid pD4759_2_2, complete
            sequence.
ACCESSION   NZ_CP135992
VERSION     NZ_CP135992.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35719801
            Assembly: GCF_030315915.2
KEYWORDS    RefSeq.
SOURCE      Providencia zhijiangensis
  ORGANISM  Providencia zhijiangensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Providencia.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Dong,X.
  TITLE     Genomic Revisitation and Reclassification of the Genus Providencia
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2428)
  AUTHORS   Dong,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-SEP-2023) State Key Laboratory for Diagnosis and
            Treatment of Infectious Diseases, National Clinical Research Center
            for Infectious Diseases, Collaborative Innovation Center for
            Diagnosis and Treatment of Infectious Diseases, The First Affiliated
            Hospital, Zhejiang University School of Medicine, huajiachi,
            Hangzhou, Zhejiang 310000, China
REFERENCE   3  (bases 1 to 2428)
  AUTHORS   Dong,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUN-2023) State Key Laboratory for Diagnosis and
            Treatment of Infectious Diseases, National Clinical Research Center
            for Infectious Diseases, Collaborative Innovation Center for
            Diagnosis and Treatment of Infectious Diseases, The First Affiliated
            Hospital, Zhejiang University School of Medicine, huajiachi,
            Hangzhou, Zhejiang 310000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SPAdes v. 3.14.1; Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina HiSeq; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/03/2024 14:27:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,495
            CDSs (total)                      :: 3,390
            Genes (coding)                    :: 3,368
            CDSs (with protein)               :: 3,368
            Genes (RNA)                       :: 105
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 77
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 22
            CDSs (without protein)            :: 22
            Pseudo Genes (ambiguous residues) :: 0 of 22
            Pseudo Genes (frameshifted)       :: 7 of 22
            Pseudo Genes (incomplete)         :: 13 of 22
            Pseudo Genes (internal stop)      :: 8 of 22
            Pseudo Genes (multiple problems)  :: 5 of 22
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP135992.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Providencia zhijiangensis"
                     /mol_type="genomic DNA"
                     /strain="D4759"
                     /isolation_source="bile"
                     /host="Homo sapiens"
                     /type_material="type strain of Providencia zhijiangensis"
                     /db_xref="taxon:3053982"
                     /plasmid="pD4759_2_2"
                     /geo_loc_name="China: Zhejiang"
                     /lat_lon="30.16 N 120.12 E"
                     /collection_date="2022"
                     /collected_by="Xu Dong"
     gene            263..691
                     /locus_tag="QS795_RS17470"
                     /old_locus_tag="QS795_017470"
     CDS             263..691
                     /locus_tag="QS795_RS17470"
                     /old_locus_tag="QS795_017470"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_250255063.1"
                     /translation="MKKEFLGLMSLLVISACSSSYERYSSVDQNLCDEFLRIAKNEYLS
                     SKECFRKNIDKYINTGSNSEVVSVVRYECRDDIRKLSYAYLDRAYCSVAEDTYSSYRSV
                     KNDLMDSSGSMLQAISSSVDERLLQYVMYYRANHELPN"
                     /name="hypothetical protein"
     gene            1331..1771
                     /locus_tag="QS795_RS17475"
                     /old_locus_tag="QS795_017475"
     CDS             1331..1771
                     /locus_tag="QS795_RS17475"
                     /old_locus_tag="QS795_017475"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_286272876.1"
                     /translation="MSQLFRLASPADYEYIEELKLWELSFDKRPLQGVRCEDPVIGAEK
                     YNRGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQT
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDVSMLKQLEEKAG"
                     /name="hypothetical protein"
     Typing          43..198
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 tctttcagcg atttcgcatc attttacttg tcagtttgaa tgatgttaaa aacgcactca
       61 gaagctcgca aaaccgttct aaactttcag cgtagatttg ggtgttttat agggtgatag
      121 tgtcttaaaa tcgttttgag gggctttaat ggggatgaac gggcggtttt cgctaaccaa
      181 ctcgcccgtt taacataaaa gggattatag gaatgctttt tagcgctaga ctattgtttt
      241 taatttcagg caagtgaaag taatgaaaaa agaatttttg ggactaatgt ccttattagt
      301 gatttcagcg tgttcatcat catatgaacg ttatagtagt gttgaccaaa atttatgtga
      361 tgaatttctc cgcatagcga aaaatgaata tttgagttca aaagaatgtt ttagaaaaaa
      421 tatagataag tatatcaaca ctggctctaa ttcagaggtt gtatctgttg ttagatatga
      481 atgtagggat gatattcgta agttgtcata cgcttatcta gatagagctt attgttcagt
      541 ggctgaagac acttactcaa gctacaggtc tgtaaaaaat gatcttatgg attctagcgg
      601 tagcatgcta caagctatat cgtcatctgt agatgagcgt ctgttacagt atgttatgta
      661 ttatcgagcg aaccatgaac ttccaaatta aagcaaaaaa accctaatgc cccaatgtgg
      721 tactaatcaa aacggagcga agcgacatcg tcatcttgtc tttgcttttc tccatgatcg
      781 gttattgggt catggcttct tagctcttta atttagctaa gtctggttag gttgggcttc
      841 tttcgacggt gcaatccaag aagtccctag tccgttgatt gatgctctta tcaggtacgc
      901 actgtaatct ttcgataccg cagcgtgatt cggaggcaga gccggaattt cgttttccgg
      961 tacgttttac taccacaatt tgcctgttta tcctttcgga gaccgggcta agtccgagtc
     1021 aatcaagtgg tgcatttgag ttagtgtctt tgaatggttt taaggaagta gtgacaagct
     1081 agcttcccat tgctaagatt ggattgtcga ggtctaatcg aagcaacgaa tgcacgcgaa
     1141 ttagattagc agagccgaag tgatgtcaca atcatttcgg ctctgcacct tctagagttc
     1201 agaaaaaaat cctttatgtt ttcaaatcgc aacgctcgcc gcaaggcgtg aacttgtttc
     1261 acgtcgagga agcggaattt cctgaaagcc ttatactatc tccgttcaca catcatcgga
     1321 ggggatcact atgtctcaat tatttcgttt ggcatcacca gcagattacg aatacatcga
     1381 agaattaaaa ttatgggaat tgtcatttga taagcgaccg cttcaagggg ttcgttgtga
     1441 agatccggtg atcggggcag aaaaatacaa tcgagggcgt gaaaaattta aggcgttagc
     1501 gtcacggcat aaaaaacact ggaaaccgaa cggattgacc ttttcggagt tgatccgctg
     1561 ggcaatagag tgcggaactc ccgaacaatg tcagcttgtt ttagcgttat accattgcac
     1621 aaacgatgat gattatcaga cgatgggaat tcagttaagc cgaagtattg ataatgcaaa
     1681 tgtcagtccg atcatctttt tcacaggtaa aaatcaacgg ttattaggtg atgtttcgat
     1741 gctaaaacag ctcgaggaaa aggcaggtta atgtcatgtt tgtttattat cctgtgtatt
     1801 attccgtatc ttattctatc taatttctct ctaatacaca gaataataca gagaataaga
     1861 tacagaataa gagatagaca caagatgacg ttgtgtcatt tcttacccat taatctaccc
     1921 gttattctac ccattacttt acccgttatt tcacccaatt taggtataac gggcagaata
     1981 atgggtaaaa taacgggtgg aatcatagtc ttactaactt acaccccatg atactttcag
     2041 tatcaatgcc actcattttc tggacgaaaa tgaatgacat aaggctccgc cctctggcta
     2101 ttttcttcgg ctggacgcct gcgaaaaaag ccattcaccc aagcccgtca aactcactgc
     2161 gttcgtctga ccaccccctt ttttcgcccc tgtatttggt cgctcaaaaa tgtggtggtc
     2221 agacgcttcg cttgacgggg ggctttgccc ccaaaacgaa acacgttcac tggggttcac
     2281 ttgccatcgc tggggcgtgt catttcgttt cggctccccc tgtttttccc tttcttcgct
     2341 ggacgctcat caggataaaa acaaaaagcc taccgccctc gttttactcg gttggtcaaa
     2401 tcgcttcttg ccacaaaaca agtttgtg
//
