LOCUS       NZ_CP135146             2683 bp    DNA     circular CON 04-OCT-2023
DEFINITION  Morganella morganii strain A19 plasmid p2, complete sequence.
ACCESSION   NZ_CP135146
VERSION     NZ_CP135146.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37478061
            Assembly: GCF_032248755.1
KEYWORDS    RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Lu,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2023) School of Laboratory Medicine and Life
            Science/Institute of Biomedical Informatics, Wenzhou Medical
            University, Chashan University Town, Wenzhou 325000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. v3.14.1; Canu v. v2.1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/04/2023 13:13:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,026
            CDSs (total)                      :: 3,920
            Genes (coding)                    :: 3,883
            CDSs (with protein)               :: 3,883
            Genes (RNA)                       :: 106
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 80
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 11 of 37
            Pseudo Genes (incomplete)         :: 29 of 37
            Pseudo Genes (internal stop)      :: 7 of 37
            Pseudo Genes (multiple problems)  :: 9 of 37
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP135146.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="A19"
                     /isolation_source="fecal water"
                     /db_xref="taxon:582"
                     /plasmid="p2"
                     /geo_loc_name="China"
                     /collection_date="2015-10-21"
                     /collected_by="Qiyu Bao"
     gene            complement(356..796)
                     /locus_tag="RN616_RS20125"
                     /old_locus_tag="RN616_20125"
     CDS             complement(356..796)
                     /locus_tag="RN616_RS20125"
                     /old_locus_tag="RN616_20125"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            complement(1434..2078)
                     /locus_tag="RN616_RS20130"
                     /old_locus_tag="RN616_20130"
     CDS             complement(1434..2078)
                     /locus_tag="RN616_RS20130"
                     /old_locus_tag="RN616_20130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             complement(1438..2078)
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(2173..2328)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.089"
                     /coverage="100.0"
                     /evalue="2.29e-71"
ORIGIN
        1 ccagccgaag aaaatagcca gagggcggag ccttatgtca ttcattttcg tccagaaaat
       61 gagtggcatt gatactgaaa gtatcatggg gtgcaagtta gtaaaactat gattctaccc
      121 attatttcac ccgttattct gcccgttata cctaaattgg gtgcaataac gggtaaagta
      181 ataggtagaa taacaggtgg attaatgggt aagaaataac acaacgtcat cttgtgtcta
      241 tctattattc tgtatcttat tctatgtatt attctaccta ttacagacga aatagataaa
      301 ataagagata gaataataga taggataata cataaaataa taggtaaacc taacgtcagc
      361 gcaccttttc ttcgagctgt tttagcatcg aaatatcacc taataaccgt tgatttttac
      421 ctgtgaaaaa gatgatcgga ctgacatttg cattatcaat acttcggctt aactgaattc
      481 ccatcgcctg ataatcatca tcgtttgtgc aatggtataa cgctaaaaca agctgacatt
      541 gttctggagt tccgcattct attgcccagc ggatcaactc cgaaaaggtc aatccgttcg
      601 gtttccagtg ttttttatgc cgtgacgcta acgccttaaa tttttcacgc ccttgattat
      661 atttttctgc cccgatcacc ggatcttcac aacgaacccc ttgaaccggt cgcttatcaa
      721 atgacaattc ccataaattt aattcttcga tgtattcgta atcttctggc gatgccaaac
      781 gaaataattg agacatagag acaccctccg atcatgtgtg aacggagaca gtataaggct
      841 ttcgagaaat tccgcttcct cgacgtgaaa caagttcacg ccttgcggcg agcgttgcga
      901 attgaattta tgaggtttac caagctccag atgtaacaaa gccccgtgac agcatcacag
      961 ggctctggta ctctaaatct tgtgcattcg ttgctcagat tagacgtcgc aatccaatct
     1021 tagcaacgtg agaggcgctt gtcacgttct cattaaatac cagccaacga cattaaccca
     1081 aatgcaccac ttgattgact cggacttagc ccggtctccg aaaggataaa caggcaaatt
     1141 gtggtagtaa aacgtaccgg aaaacgaaat tccggctcta cctccgaatc acgctgcggt
     1201 atcgaaagat tacagtgcgt acctgataag agcaccaatc aacggactag ggatttcttg
     1261 gattgcgaag tgtcgaaaga agcccaacct aaccaaactt agccagatta acgagctaag
     1321 agaccatgac ccaataactg atcatggaga aaagcaaaga caagatgaag atgtcgcttc
     1381 gctccgtttt gattagtacc acattggggc attaggcgtt ttttacctag attttatcgg
     1441 tgaacaataa cacctaaact ctcaacaagc tgaagcgcct gctctccatc caacttcact
     1501 ccatctaaat taattcgcct tgcatcaagc tcgccaagcg ccccacccgt taaatcacaa
     1561 ccagtaaaat cagccaaaga ccaatcaaac gatgaaaact ccccacaaga aagatcggag
     1621 ccacgaaaca cggcgccagt tatcacagtg ccattccagc gattttccca cagttcgcac
     1681 ttttctaata tgactctaga aaaattagcg taactaagat ttgtcttggt tatataagca
     1741 ctacaaaacc atgaccttgt agttatcata ttcataaaat tagcccctcg aaaatcagct
     1801 ccttgagcta aacactcact aatttcaaga cctaaggcgc taatgttttt aaaattactc
     1861 attgataaat cgcagctttt aaagctagcg ttttttagtt tggctctatt aaaatcacac
     1921 ccttccaagc tattcctgtc gtaaaaacta caatcaacaa attcagtatc agttaaatca
     1981 acccctgaaa aatcacaatt tgaaaaggca atatttttaa ctctattccc cgtaaattga
     2041 tctcgtgaaa acttttcatt gataaagtgc ttttccatac atgctacacc tggttattta
     2101 tacagtgcaa tcattgtaca ttaatttgaa caaccttaaa ctctagctaa aattgattca
     2161 tacaatccct tttatgttaa acgggcgagt tagttagcaa aaacctcccg ttcatcccca
     2221 ttaaagcccc tcgaaacgat tttaagacac gatcacccta taaaacaccc aaatctacgc
     2281 tgaaagttta gaacggtttt gcgggcttct gagtgcgttt ttaacatcgt gcaaactgac
     2341 aagtaaaacg atgcgaaatc gctgaaagtc acaaacttgt tttgtggcaa gaagcgattt
     2401 gaccaaccga gtaaaacgag ggcggtaggc tttttgtttt tatcctgatg agcgtccagc
     2461 gaagaaaggg aaaaacaggg ggagccgaaa cgaaatgaca cgccccagcg atggcaagtg
     2521 aaccccagtg aacgtgtttc gttttggggg caaagccccc cgtcaagcga agcgtctgac
     2581 caccacattt ttgagcgacc aaatacaggg gcgaaaaaag ggggtggtca gacgaacgca
     2641 gtgagtttga cgggcttggg tgaatggttt ttttcgcagg cgt
//
