LOCUS       NZ_CP135120             2511 bp    DNA     circular CON 02-OCT-2023
DEFINITION  Enterobacter hormaechei strain F2 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP135120
VERSION     NZ_CP135120.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36017835
            Assembly: GCF_032231155.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2511)
  AUTHORS   Zhang,B.
  TITLE     Algicidal process and mechanisms of Enterobacter hormaechei F2
            revealed by an integrated transcriptomic and metabolomic approach
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2511)
  AUTHORS   Zhang,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-SEP-2023) School of environmental science and
            technology, Sun Yat-sen University, Zhonghuan Dong, Guangzhou,
            Guangdong 510000, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SOAPdenovo v. 2
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 99.48x
            Sequencing Technology             :: Illumina; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/02/2023 13:40:07
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,546
            CDSs (total)                      :: 4,430
            Genes (coding)                    :: 4,370
            CDSs (with protein)               :: 4,370
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 22 of 60
            Pseudo Genes (incomplete)         :: 40 of 60
            Pseudo Genes (internal stop)      :: 8 of 60
            Pseudo Genes (multiple problems)  :: 10 of 60
            Pseudo Genes (short protein)      :: 1 of 60
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP135120.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2511
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="F2"
                     /isolation_source="environmental"
                     /db_xref="taxon:158836"
                     /plasmid="unnamed3"
                     /geo_loc_name="China:Guangzhou"
                     /collection_date="2017-09-10"
     gene            complement(96..281)
                     /locus_tag="RPB40_RS22720"
                     /old_locus_tag="RPB40_22720"
     CDS             complement(96..281)
                     /locus_tag="RPB40_RS22720"
                     /old_locus_tag="RPB40_22720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032105038.1"
                     /translation="MTRQESAALNMAKFIRSQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYTMLNAQTGEEDA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(648..875)
                     /locus_tag="RPB40_RS22725"
                     /old_locus_tag="RPB40_22725"
     CDS             complement(648..875)
                     /locus_tag="RPB40_RS22725"
                     /old_locus_tag="RPB40_22725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            complement(1303..1446)
                     /locus_tag="RPB40_RS22730"
                     /old_locus_tag="RPB40_22730"
     CDS             complement(1303..1446)
                     /locus_tag="RPB40_RS22730"
                     /old_locus_tag="RPB40_22730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032610644.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHVKTPLAAATGKGYTRLLVQ
                     SS"
                     /name="hypothetical protein"
     Typing          complement(1282..1842)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.339"
                     /coverage="91.0"
                     /evalue="0.0"
ORIGIN
        1 cgccggcatc acaaataccc aggtcagggc tgcgccccga caccccgcca tcgcctcacg
       61 gccgcgcact gaattgcgca cccgttcacc gattttcacg catcttcctc gcctgtctgt
      121 gcgttcagca tggtgtaaag tgcttcggcc tgatcgtgca ggtgctcaca gcagccggca
      181 gcctcatcca gatccatctg ttcgagccgc tcgaggagga ggagtgtctg tgagcggata
      241 aatttggcca tgttgagggc ggcggattcc tgtctggtca ctggtgattt tccccgtctg
      301 gtgatgattt ttgcgtgaaa agagcatgcc gtcattctgg tgcatagtca tgcatgccgt
      361 taaaatttaa caggagcgtt tctggcgggt tccggggtgg tttgttgtgg tttttggtca
      421 tggttccgtc agaaaagcgc tgagtgcgtc tgaggcggtg cgggcaacgg atgttatggt
      481 aaattcttgg ggggcttgat tataaaaacc gcacttcctc taatgtcttg tgctttttag
      541 acaaccctgg aagcttttag ctttggtggt gcaatttgct gggattttgg cggagaaccc
      601 caggtaaaga aaaaggccac attagcggcc tttttcggag aagatgctca gtgcggaatt
      661 tcggagactt ctttaacgtc ggttttattg atctgctgtt tgacaccatt cgcgtctgta
      721 tagccaagca ggcctgagtc tgattcttta ggtttgccgt cgctgacaat agtgcgcccg
      781 tcattggtgt gtatggcata gcttgtgcgc gtgcagccgg tgagggctga aagcgcaact
      841 gccgctgcga acacggaaac aaaaatcttt ttcaaagcca gctcctttta tccatatcag
      901 ttttggtcac taaccatcta actataggtc attttttatg tgaaaagagg cttgatggtg
      961 ggctgcatat cgagttaggt gcgaggtgtt atggttaaag tgtggtgtct ggcggggagg
     1021 gggcagtgcg ggcttatatc tgatgtaatc cgaccgatac atataccaag atgatttaag
     1081 tattcctctt tgtgaggttg gatgtctaat ttataaaagg atcttcttga gatccttttt
     1141 tttcgcgcgt aatctcttgc cctgtaaacg aaaaaaccac ccggcaaggt ggtttttcga
     1201 aggttcagca aaccggcaag tttctgaacc gtggtaacag ggtgtacaag accgctgcca
     1261 ccaaatttgt ccttctagtg tagccgcagt caggcgtcaa cttcaagaac tctgcaccag
     1321 taatcttgta taccccttac cagtggccgc tgccagtggc gtttttacgt gtctttccgg
     1381 gttggactca agacgatagt taccggataa ggcgcagcag tcggactgaa cggggggttc
     1441 gtgcatacag tccatcctgg agcgaactgc cttcccggaa ccgagtgtca ggcgtggaat
     1501 gagaaaccgc ggccataaca gcggagtgac accggtaaac cgaaaggcag gaatgcgggg
     1561 gagcacgagg gagccatcag ggggaaacgc ctggtatctt taagccgcat cgggtttcgc
     1621 caccactgat ttgagcgtca gatttcgtga tgctcgtcag gggggcggag cctatggaaa
     1681 aacggcttcg gcgcggcctt atgccttctt cgctaagtat cttcctggca tcccctagct
     1741 ggcatcccct aggaaatttc tgctccaccc gtaagcccgt accgctcgcc gcagccgaac
     1801 gaccgagcgc agcgagtgag tgagcgagga agcggaatat atcctgtatt acattttctc
     1861 ctgacgcgtt ttctttcatt ttctgcgcct gtcttatgta gcagttatgc tatgcgttac
     1921 tgcggtgtta cattttagcc agtatacact ccgctagcgc tgagtgactg gtccggcgct
     1981 gcgcccggaa cccgcctgta ccggttcagc agccgttccg ggctgactgc aattttttta
     2041 ttttcctgcc cgctaccctg taaacctttc ttctgcgttg ccgttaacag gaggtaagcc
     2101 atgtttggtt tttcttccgg agacctgatg actcttgatg atgagcgaca cctgtttgtg
     2161 tctgttgttt cgggctggct ccggcgtgcc ggggggatgc cggagccatg atgctggatg
     2221 cataccggca gattttgtct gaaactgaac cggccgtaag gacggtcatg ctcgaatttc
     2281 ttgaatccgt tcgcattcat tacatttcgt cctgagcatt ttctgtattt ctgtccatac
     2341 ttaaacgagg cggccgtcac ggacgatggt cgtcgttgca tgatgctgtt atggatgagt
     2401 gaaagtaatc taatctaact tgacttacct tccgggcagc tccccggttt ttttttgcct
     2461 gttcccgggg aaccactcag gacaggatgt gtatttgtaa taccgcgcac g
//
