LOCUS       NZ_CP134009             2987 bp    DNA     circular CON 21-OCT-2023
DEFINITION  Klebsiella pneumoniae strain AMR200031 plasmid unnamed11, complete
            sequence.
ACCESSION   NZ_CP134009
VERSION     NZ_CP134009.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37176067
            Assembly: GCF_032829175.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2987)
  AUTHORS   Lai,Y.-C.
  TITLE     Diversification of ST11 KL64 Klebsiella pneumoniae in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2987)
  AUTHORS   Tang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2023) Microbiology and Immunology, China Medical
            University, No. 91, Xueshi Road, Taichung 40402, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/21/2023 13:11:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,998
            CDSs (total)                      :: 5,874
            Genes (coding)                    :: 5,749
            CDSs (with protein)               :: 5,749
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 49 of 125
            Pseudo Genes (incomplete)         :: 73 of 125
            Pseudo Genes (internal stop)      :: 14 of 125
            Pseudo Genes (multiple problems)  :: 11 of 125
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP134009.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2987
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="AMR200031"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed11"
                     /geo_loc_name="Taiwan: Kaohsiung"
                     /lat_lon="24.24 N 120.54 E"
                     /collection_date="2019-06-04"
                     /collected_by="Kaohsiung Medical University Chung-Ho
                     Memorial Hospital"
     gene            join(2016..2987,1..3)
                     /gene="mobV"
                     /locus_tag="REM89_RS29980"
                     /old_locus_tag="REM89_29980"
     CDS             join(2016..2987,1..3)
                     /gene="mobV"
                     /locus_tag="REM89_RS29980"
                     /old_locus_tag="REM89_29980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_033995413.1"
                     /translation="MAAYAIMRCKKLATMGSVAAALQHCYRERETPNADAERTPDNEHR
                     AATSTDAAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWAKATPQQQAAFFDQAQGWLA
                     AKYGADRIVTASIHRDEATPHLSAFVVPLTQDGRLSAKEFIGGRDKMRADQTSFAEAVR
                     DLGLERGIEGSRATHQRVQSYYGAIERQPGHATITPQAIEPRVLRKGIFSKDVETPEAV
                     AARVTAAVREGYGPTVAAAAGARQEREKARQAQETARSLRDRLKPVLDALGPLNRDMQA
                     KAAQIIKAVGEKLLAEQREATRQRQAQRLRSRGRDRDDGGLSR"
                     /name="mobV"
     gene            complement(30..350)
                     /locus_tag="REM89_RS29985"
                     /old_locus_tag="REM89_29985"
     CDS             complement(30..350)
                     /locus_tag="REM89_RS29985"
                     /old_locus_tag="REM89_29985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004028395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MliC family protein"
                     /protein_id="WP_317085480.1"
                     /translation="MKKTFALAAMMAAIAPNLASAADKMIQTKYACEGGKTLDVVYVGD
                     YAVMLQMDELVPLKRAKSASGVRYISASKNYTYELWGKGNDMNLSTHDGGKEQTVLSSC
                     KP"
                     /name="MliC family protein"
     gene            complement(<385..933)
                     /locus_tag="REM89_RS29990"
                     /old_locus_tag="REM89_29990"
                     /pseudo=""
     CDS             complement(<385..933)
                     /locus_tag="REM89_RS29990"
                     /old_locus_tag="REM89_29990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722544.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 tgaccctaca ggtggccgac ggaaggggtt tatggcttgc agctactgag gacggtttgc
       61 tccttcccgc catcgtgggt cgaaaggttc atgtcgttgc ccttacccca cagttcgtag
      121 gtgtagtttt tgctagcgga gatgtagcgc actcctgatg cgctcttggc gcgtttcagt
      181 gggacaagct catccatttg cagcatcacg gcatagtctc cgacgtacac gacatccaac
      241 gtctttccgc cttcgcaagc gtacttggtc tggatcatct tatccgccgc tgaagcaaga
      301 ttcggagcga ttgccgccat catggcagca agagcgaacg tttttttcat aaagattttc
      361 tccttcgttt cgttgctcat tgtggggagt gccttcaaac atgtccagcg tgttcgggtc
      421 gcggtcgtcg tttggccgct cttccgggct gaacatcgac atgatccggc ggcggatatc
      481 gccgtccttg ttgaccaagg ttttggtcac gaaggccgcg tattccttgg cgttgtcgta
      541 gcccttccag acctcgtgag ggtccagcgc gtaggcgcaa actcggccag cgacagggat
      601 gcggacaagc gcccggtttt cttccaggta ggcgagccaa gaccggatag tcctggtagt
      661 caccttcatg tgatcggcca aaaactgctg atcgcagatc accgcgccac aagtcgggtc
      721 gatgtgctcg gcaaagaggg cgtacagacc ggcagcgcct gaattgcccg tagcaagctc
      781 ccgtacgcgc ctccaacccc tcgaatacac ctgtgtgaac cccttgttct tccgcgcttc
      841 ctcgcgctcc tgagcctctt tctcgtccag catggccagc tcgcgctggc gaatacgccg
      901 ttgagcgtcc gtcgctaccg tgatctgctg catgggcatc ccctcaaacc ggaaacactg
      961 catccggaca atcggacgtc agcttcctat tggtggaaat tctattccga gtcgacagtc
     1021 ctatgcaagg attttttttt cctattatag gaagtgagcg gaagcaagct gcttccggtt
     1081 gtccggaagc cctgcttcct attacatccg cctaacttat tgtttttatt caaaatcagt
     1141 atttttccct tctcctctaa ggggctgccg ccccgccggc ggccgctgcg cggccttggc
     1201 accccgctga cggcccctgc ggggcctctg gaaaaggcca cccggccggt ggccgggtga
     1261 cgttgtttgt ggggcctccg gcggccgctg cgcagccttg gggcggtggg cgctgccccc
     1321 cgccaccccc cgcgttcgcc acgtggcagg ggtgcagggg ctacgggcct gcggcccttc
     1381 actcctgcac ccctaccggg gagcgtgggt cgttccaggc gcgtcaaggg ccgctgcgct
     1441 ctccgggggt ggcccgtgtc ctcgccctgc gggctgcggg ccgcgccagc caccccctgc
     1501 gcccttgacc cgccttccac tccggcgctg tcggaaattt cctacccggc catgaggcga
     1561 tttccgacac gccagcgggc cactggctga cgccttcagc ggagggcagg gtcaagggcg
     1621 cgcccgcagg ccgcagcccg gagcgaagcg cagggaccgg gcgaggacgc gggcgaagcc
     1681 gaacccttga cgctgaccgc agcgccccag cctgtgcgag tgggggcagg gacgaagggc
     1741 gaagcccgcc acccctgccc cccgagcctc ccggcggcga gggtggggag tccagagggg
     1801 caaagcccct ttgggcaagg ccgaaggccg ccgcaggagc aaggccgaag gccgccgcag
     1861 gagcaagccc gaagggcgct gcaaccgccg caggcgggca cgactttgcg aagcaaagtc
     1921 tagtgagtac actatcatct gatagtggcc cgccggaggc accgccttgc gctgccccga
     1981 ctggccggat tcggacacca aggggagggg caggcatggc ggcctacgcg atcatgcgat
     2041 gcaagaagct ggcgacgatg ggcagcgtgg cggcggcgtt gcagcactgc taccgcgagc
     2101 gcgaaacgcc caacgctgac gccgaacgca cgccggacaa cgagcaccgg gcggccacct
     2161 caaccgatgc ggcgatgggg cggctgcgcg agttgctgcc ggagaagcgg cgcaaggacg
     2221 cggtgctggc ggtcgaatac gtgatgacgg ccagcccgga atggtgggcc aaggccacgc
     2281 cccagcagca ggccgcgttc ttcgaccagg cgcagggctg gctggcggcc aaatacggcg
     2341 cggatcgcat cgtgacggcc agcatccacc gcgacgaggc caccccgcac ctgtcggcct
     2401 tcgtcgtgcc gctgacgcag gacgggcggc tgtcggccaa ggagttcatc ggtggccgcg
     2461 acaagatgcg ggccgaccag accagctttg ccgaggcggt gagggatctc gggctggaac
     2521 gcggcatcga gggcagccgg gccacccatc agcgcgtcca gagctactac ggcgccatcg
     2581 agcgccagcc cgggcacgcc accatcacgc cgcaggccat cgagccgcgg gtgctgcgca
     2641 aggggatttt ctcgaaggac gtggagacgc cggaggccgt ggccgcccgc gtgaccgctg
     2701 ccgtcaggga agggtatggc ccgaccgtcg cagcggccgc aggagcgcgt caggagcgcg
     2761 agaaggcccg gcaggcacag gagacagccc ggagcctgcg tgaccgcctg aagcccgttc
     2821 tggacgctct ggggccgctt aatcgcgata tgcaggccaa ggcggcccag atcatcaagg
     2881 ccgtgggcga gaagctgctc gccgaacagc gcgaggcgac acgccagcgg caggcccaac
     2941 ggcttcgcag tcgcggccgg gatcgcgacg acggcgggct gtctcgt
//
