LOCUS       NZ_CP134007             3556 bp    DNA     linear   CON 21-OCT-2023
DEFINITION  Klebsiella pneumoniae strain AMR200031 plasmid unnamed9.
ACCESSION   NZ_CP134007
VERSION     NZ_CP134007.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37176067
            Assembly: GCF_032829175.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3556)
  AUTHORS   Lai,Y.-C.
  TITLE     Diversification of ST11 KL64 Klebsiella pneumoniae in Taiwan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3556)
  AUTHORS   Tang,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-SEP-2023) Microbiology and Immunology, China Medical
            University, No. 91, Xueshi Road, Taichung 40402, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/21/2023 13:11:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,998
            CDSs (total)                      :: 5,874
            Genes (coding)                    :: 5,749
            CDSs (with protein)               :: 5,749
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 49 of 125
            Pseudo Genes (incomplete)         :: 73 of 125
            Pseudo Genes (internal stop)      :: 14 of 125
            Pseudo Genes (multiple problems)  :: 11 of 125
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP134007.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3556
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="AMR200031"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed9"
                     /geo_loc_name="Taiwan: Kaohsiung"
                     /lat_lon="24.24 N 120.54 E"
                     /collection_date="2019-06-04"
                     /collected_by="Kaohsiung Medical University Chung-Ho
                     Memorial Hospital"
     gene            <1..316
                     /locus_tag="REM89_RS29935"
                     /old_locus_tag="REM89_29935"
     CDS             <1..316
                     /locus_tag="REM89_RS29935"
                     /old_locus_tag="REM89_29935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004181894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4113 domain-containing protein"
                     /protein_id="WP_317085479.1"
                     /translation="TRDIIAAAGRALDKIWKDGHNYAKAGVMLNDFRPCGVTQLSLFDE
                     GRSYANSDALMNVLDTINNSGKGKVWFAGRGIAPAWSMKRDMLSPAYTTRWDSIPIATL
                     "
                     /name="DUF4113 domain-containing protein"
     gene            417..860
                     /locus_tag="REM89_RS29940"
                     /old_locus_tag="REM89_29940"
     CDS             417..860
                     /locus_tag="REM89_RS29940"
                     /old_locus_tag="REM89_29940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004181895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin Xre/MbcA/ParS toxin-binding
                     domain-containing protein"
                     /protein_id="WP_004026357.1"
                     /translation="MKTFSLSSTPARPQRLWQVAGLNNADGVALLGQINEGLDGKVANR
                     ITDWARITQNDLRKMSGIPSTTFSRSVKARFNPEQSERLVRIIRVIDRAVDLFEGDKEA
                     AQKWLNEPNRALSWKVPADLMASETGAYEVIKLITRLEHGVYS"
                     /name="antitoxin Xre/MbcA/ParS toxin-binding
                     domain-containing protein"
     gene            857..1327
                     /locus_tag="REM89_RS29945"
                     /old_locus_tag="REM89_29945"
     CDS             857..1327
                     /locus_tag="REM89_RS29945"
                     /old_locus_tag="REM89_29945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004144067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RES family NAD+ phosphorylase"
                     /protein_id="WP_004026354.1"
                     /translation="MILYRLTKTKYLSTAWTGYGAKEAGGRWNSVGVSMVYVSETASLT
                     MLETLVHLHAAQIMDSFTLLSIDVPDELIQSANMDELPGNWADEDAPQELADYGDAWSF
                     TRSSVALRVPSALSPVEFNYLLNPEHPEFYGIVQKAQQIPFRFDSRLKPDRK"
                     /name="RES family NAD+ phosphorylase"
     gene            complement(1782..1970)
                     /locus_tag="REM89_RS29950"
                     /old_locus_tag="REM89_29950"
     CDS             complement(1782..1970)
                     /locus_tag="REM89_RS29950"
                     /old_locus_tag="REM89_29950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004902422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024198076.1"
                     /translation="MTVKVELPNIPSEDVHVIEPPGRPGQGLDDIMRELGYDLSSIDII
                     DFNLNPLDTILSQGEQN"
                     /name="hypothetical protein"
     gene            complement(2582..2842)
                     /locus_tag="REM89_RS29955"
                     /old_locus_tag="REM89_29955"
     CDS             complement(2582..2842)
                     /locus_tag="REM89_RS29955"
                     /old_locus_tag="REM89_29955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017901409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_201621188.1"
                     /translation="MTLTAYYQLRNTKPAGLGFELLTSEPGAFIVLEECSYEKPYEIAR
                     YGHNGSAGDRANAFSCAMNKARSLQNYSGAKLDYNVYEETA"
                     /name="hypothetical protein"
ORIGIN
        1 tacgcgggac attatcgcgg cggcgggccg ggctctggat aaaatctgga aagacggaca
       61 taactatgca aaggcaggtg tcatgctcaa cgatttccgt ccctgcggag ttacccagct
      121 atcgttattt gatgaaggga ggtcgtatgc aaacagtgac gcgctcatga acgtactgga
      181 tacgataaac aactcaggca aaggcaaagt atggtttgcc ggtcgtggca tcgcaccggc
      241 gtggtcaatg aagagagata tgctctctcc agcctacaca acgaggtggg actcgatacc
      301 gatcgctaca ctctgaggta tcgcaatcag gaaaaatgcc taccgtctgc tggtggttga
      361 tatttgctct ggcgttacca tttgggtata atgtaatgac caagtggagg tttgctatga
      421 aaacttttag tttgtcctca actccagcca gaccacagcg cctctggcag gttgccgggt
      481 taaataatgc tgatggtgta gcgctcctgg gccaaatcaa tgaaggcctg gacgggaagg
      541 tggcgaaccg gatcactgac tgggccagaa taacccagaa tgacctgaga aaaatgtctg
      601 gtatcccgtc gaccactttt agccgcagtg tgaaggcacg ttttaacccg gaacaaagtg
      661 aacgtctggt acggattatc cgcgtcattg atcgggcggt agatttgttt gaaggcgaca
      721 aggaagccgc acagaagtgg ttgaacgaac ctaaccgggc attgagctgg aaagtgccag
      781 cagacctgat ggcatccgag acaggagcgt atgaggtcat taagctgatt acgcgtctgg
      841 agcatggggt gtactcgtga tcctctacag gctgacgaaa acaaagtatc tttctacggc
      901 ctggaccgga tatggtgcga aagaggctgg tgggcgttgg aatagcgtgg gggtgtcaat
      961 ggtatatgtc tccgaaacgg catcactaac gatgctggag acgctggtac acctgcatgc
     1021 ggcacagata atggactctt tcacgctact gagtatcgat gtgcctgatg aactgatcca
     1081 aagcgcaaac atggatgaat taccgggcaa ctgggctgat gaggatgcgc ctcaggaact
     1141 ggctgattac ggagatgcct ggtcatttac caggagctcg gttgcactgc gtgttccctc
     1201 agccttatcg ccggtagagt tcaattatct gttaaatcct gagcaccctg agttttacgg
     1261 gattgtgcag aaggctcaac agataccgtt ccggtttgat agtcgtctta aacctgacag
     1321 gaagtgaagc aaaggaggag agggcgctgt catgatgcct ggcactcctg tccggtgtca
     1381 cataaaaacc accagcggcg ggatgccttt gggaagtgtc tatacatcgt actaaaaata
     1441 tatcttttcg caattgtcgg ccaactaatt gaatttttcg ggaaagccaa agaaggtaaa
     1501 caatcagaaa aagaaatatg tgctattgct caggctggac tcggacaggc ttgtccgaat
     1561 tgaaaaacat tgggcgttta ctaactgcga ttgagtgaca gaaataatat cacattccgt
     1621 aaacattgga agtttatggg atgagcaaag cagaaaagta actttttatg ccgtactcat
     1681 cacgatgaaa caatgaattg caacccttct catgctggtg ggctttcttg acttggctcg
     1741 atgacaatgc agggtaatgg tttaccatgc attcatctct atcagttctg ttcaccctga
     1801 gatagaattg tatccagagg gtttaagtta aagtcgatga tgtcgatgct gcttaaatcg
     1861 tatcccaatt ccctcattat atcatccaga ccttgccctg ggcgtcccgg aggttctata
     1921 acgtgtacat cctcactggg gatatttggt agttcaactt ttactgtcac agataactcc
     1981 ttagccctgt tttaactttt tgtctatccg cagccaactt atctacggaa atacgctcta
     2041 aagtacggca cagagactta aggctggtag ctctgagttg tacttcttta taccactcta
     2101 tagcagggac agacttaagt gaaggagtct ctgctctgaa aatataatac catggaagta
     2161 gggtttatac cgtggcgtta atcaacgaat tcaatattat ttccagtaat ccttttctgc
     2221 tggttatacc agaacgagga tgactggagc taaataatct atctgtagcg cgattgtagg
     2281 cgctaagcag ggcatccagt gcttagaagg tatcacgcag atgctgggtt gcggtatcac
     2341 gtattcagac ctttcgccgg tagagttcaa atatctgtta aatcctgagc gccctgagtt
     2401 ttacgggatc gtgcagaagg ctcaacagat accgttccgg tttgatagtc gtcttaaacc
     2461 tgacaggaag tgaagcaaag gaggagaagc gctgtcatga tgcctggcgc tcctgtccgg
     2521 tgtcacataa aaaaacccgc cagcggcggg caaagactac acacaattat tacaggatga
     2581 ttcaggcagt ttcttcgtaa acgttgtaat ccagttttgc tccactgtaa ttctgcagac
     2641 tacgggcttt attcatcgcg cagctgaacg cattcgcacg atcgcctgca cttccgttat
     2701 gcccatagcg ggcaatttca tacggtttct cataactgca ttcttccagc acaataaagg
     2761 ctcccggttc actggtcagc aattcgaaac caagacctgc gggctttgta ttccttagct
     2821 ggtaatatgc agtgagtgtc ataattgatt ccttaaaata ataccgatac aaagatattt
     2881 ctacaggcat tgttgagtct gtgaaattgc tgatagttca gagtgcttgt aagtaataat
     2941 aacttattca agtggcgcgt caattggcta aataacctta ccttcattaa attttaaaga
     3001 aatacaatca ggaaaagtga ctttaaaaat ctctttcgaa catgacgcta ctgatatctg
     3061 atattgcctg gagaattttg tcataggcgt agacctctat ttgggcgtaa atcttcaaac
     3121 tggtagctga gtcgtttggt taacatcaga catgggcgca gctggcgaac aagggggttg
     3181 tcctggcaat gcattgcgtc tgcacagaac cgctacattg gacggcgcag aagtggtaac
     3241 cggagcatat cgacagaggg gaaaattcat gactgaactc cagcagatgc cgggatgcag
     3301 ggcagaaaca cggcggaaac catcttaaaa gttattaact taccagctta ttagccctgg
     3361 gaggatggga gtaaacaggg tataatggtg tcggcgcttg aggctttttg cctcatgatg
     3421 tttgagtgtt ttgatgttgt gaggcagaaa gaagaaagcc ccgtaggacg ttaattttca
     3481 ttaaccaacc acacgaggcc atctgcttga ctagacacca acagagtagc ctcttagctg
     3541 ccgtaaggca aggaga
//
