LOCUS       NZ_CP133425             1749 bp    DNA     circular CON 08-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kedougou strain SA613
            plasmid unnamed4, complete sequence.
ACCESSION   NZ_CP133425
VERSION     NZ_CP133425.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37156894
            Assembly: GCF_031182935.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kedougou
  ORGANISM  Salmonella enterica subsp. enterica serovar Kedougou
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Wetchasirigul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2023) Veterinary public health, Faculty of
            Veterinary science, Henri-Dunant Road, Pathumwan, Bangkok, Bangkok
            10330, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 12-JUN-2022
            Assembly Method                   :: Unicycler v. v0.4.8
            Assembly Name                     :: SA613
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/07/2023 04:08:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,972
            CDSs (total)                      :: 4,852
            Genes (coding)                    :: 4,719
            CDSs (with protein)               :: 4,719
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 57 of 133
            Pseudo Genes (incomplete)         :: 97 of 133
            Pseudo Genes (internal stop)      :: 26 of 133
            Pseudo Genes (multiple problems)  :: 41 of 133
            Pseudo Genes (short protein)      :: 1 of 133
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP133425.1.
            Bacteria and source DNA available from Salmonella enterica subsp.
            enterica.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kedougou"
                     /mol_type="genomic DNA"
                     /strain="SA613"
                     /serovar="Kedougou"
                     /isolation_source="Human feces"
                     /sub_species="enterica"
                     /db_xref="taxon:358771"
                     /plasmid="unnamed4"
                     /geo_loc_name="Thailand: Chiang Mai province"
                     /lat_lon="18.796143 N 98.979263 E"
                     /collection_date="2007"
                     /collected_by="Chulalongkorn university"
     gene            201..1190
                     /locus_tag="RC084_RS24860"
                     /old_locus_tag="RC084_24855"
     CDS             201..1190
                     /locus_tag="RC084_RS24860"
                     /old_locus_tag="RC084_24855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_309004582.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYLDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKIEVKKYRRSPTKDKTESE"
                     /name="protein rep"
     Typing          complement(919..1108)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.859"
                     /coverage="99.0"
                     /evalue="3.7200000000000003e-85"
ORIGIN
        1 agggtttcag cgtgatttgc ctgaaaatga ctttgaagtt attctgtcgg gagtggtcgc
       61 gttaaaagcg acccccgcaa cgacggccat cgttcggggg cgtgaccacc tgtaggaatt
      121 ctattttgcg acagacaaca caggtgatac ggcaatgata acacgtcaag tgagccatcg
      181 cccagtatgg ggcggtgcgc atgaaaaatc ctgaactcca gaacctcacg gactattccc
      241 cctcagatgc gccctgggac gctcacagaa gcgtttctga cgacgtggga gggatttacc
      301 tgcttgcggc cgaatatgag cgctacgggg cgcgtatggc ctcctgcggc ggtttactgc
      361 gtttcgggtg gtctaccctc aaagaaaccg gagaaacgcg cctgaggctg cgtgaggcgc
      421 atttctgccg tgtccggcac tgtcctgtct gccagtggag gcgctccctg atgtggcaag
      481 cccgtttcta ccagtccctg ccgcgtatcg tggcggatta cctcgattcc cgctggatgt
      541 tcctgaccct gaccgtgcgc aactgtgcga tcggggagct gggcgatacg ctgagccgga
      601 tgaacacggc tttccagcgg ctgaaggatc gcaaagagtt cagaccagtt cagggatgga
      661 tccgcaccac ggaagtcacc cgcggcagtg acggcagcgc acacccgcac ttccacacac
      721 tgatgatggt tccgcctggc atgcttaacg ggaagagtta cgtcaaacat gcgcgctggg
      781 ttgagctgtg gcgggagtgc cttcgggtca gctacgatcc gaatgtcgat gtccgggcag
      841 tgaaaccccg gaagccgaag gacggcgaat cgctggcctg cgcgaccgcc gaactggtgc
      901 gcggcgcggt ggccgagacc ctgaaatatt ccacgaagcc ggccgacatg gtcgccgatc
      961 ctgaatggtt cctcgaactg acccgccaga cgcacaagcg ccgctttgtg gcgaccggcg
     1021 gcgcactcaa agacgtattg aaactcgatc aggaaaccga tgccgacatg gtgatcgggg
     1081 atgatatttc cgagggcgat gatgacggtt cccgcatcgc gttcgagtgg aaaatcgagg
     1141 tcaaaaaata ccggcgttcg ccgacgaaag ataaaaccga atcagagtaa aaacactgcg
     1201 atgcaggata gggcaaacgc cgcaaaatga cgtcatccga catcattccg ccgcgttcgc
     1261 ccagtgacct gcagtcggct ctggggtgtc ggggctgcgc cctgacctgg ggttttagat
     1321 tgcggccatc gtgatggcgg taatacaaaa cgcacgggac aagatgtgtt tttggagtac
     1381 cgccgacacg cgacggacag tccaaaatat cttggtcagg gctgcgcccc gacaccctgc
     1441 caacacctca cgccgccaga ttaaaatctg ccagcgttcg ccgttcctga aatcgtcaaa
     1501 cgctaaatcg tggggtcccg ctggcttgcc agtgggttcc gatttagtga ttgacgagcg
     1561 cacccgtaaa acactgccga caggtggttg tgatcacgca gtgagcgcaa ccacctgata
     1621 agcgtttttg gggtttgtgg ggtccgattt aacgtggatt ttgggggcaa aaaaatcgcg
     1681 cgcgttcctt gtatttatac ttaagggata actctggcgt taagaataag cctcagccct
     1741 tgtgccgca
//
