LOCUS       NZ_CP133424             4657 bp    DNA     circular CON 08-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kedougou strain SA613
            plasmid unnamed3, complete sequence.
ACCESSION   NZ_CP133424
VERSION     NZ_CP133424.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37156894
            Assembly: GCF_031182935.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kedougou
  ORGANISM  Salmonella enterica subsp. enterica serovar Kedougou
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Wetchasirigul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-AUG-2023) Veterinary public health, Faculty of
            Veterinary science, Henri-Dunant Road, Pathumwan, Bangkok, Bangkok
            10330, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 12-JUN-2022
            Assembly Method                   :: Unicycler v. v0.4.8
            Assembly Name                     :: SA613
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/07/2023 04:08:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,972
            CDSs (total)                      :: 4,852
            Genes (coding)                    :: 4,719
            CDSs (with protein)               :: 4,719
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 133
            CDSs (without protein)            :: 133
            Pseudo Genes (ambiguous residues) :: 0 of 133
            Pseudo Genes (frameshifted)       :: 57 of 133
            Pseudo Genes (incomplete)         :: 97 of 133
            Pseudo Genes (internal stop)      :: 26 of 133
            Pseudo Genes (multiple problems)  :: 41 of 133
            Pseudo Genes (short protein)      :: 1 of 133
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP133424.1.
            Bacteria and source DNA available from Salmonella enterica subsp.
            enterica.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kedougou"
                     /mol_type="genomic DNA"
                     /strain="SA613"
                     /serovar="Kedougou"
                     /isolation_source="Human feces"
                     /sub_species="enterica"
                     /db_xref="taxon:358771"
                     /plasmid="unnamed3"
                     /geo_loc_name="Thailand: Chiang Mai province"
                     /lat_lon="18.796143 N 98.979263 E"
                     /collection_date="2007"
                     /collected_by="Chulalongkorn university"
     gene            complement(join(4609..4657,1..431))
                     /locus_tag="RC084_RS24830"
                     /old_locus_tag="RC084_24825"
     CDS             complement(join(4609..4657,1..431))
                     /locus_tag="RC084_RS24830"
                     /old_locus_tag="RC084_24825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023138585.1"
                     /translation="MNLLLPRDIVEAVLNDKKTKNARVAKCDGSEFFLELPSMNADFPA
                     GKIILKLGDSGFYNKRTKSLEGAYGLRHIWDKHRVEIGATSAEDIVIFLESILLAGAEV
                     LIDPKKGQNKAIVVESGTGMMILELKKPNGEDPYYSIITAYDRKSHPGTKLHTII"
                     /name="hypothetical protein"
     gene            691..1458
                     /locus_tag="RC084_RS24835"
                     /old_locus_tag="RC084_24830"
     CDS             691..1458
                     /locus_tag="RC084_RS24835"
                     /old_locus_tag="RC084_24830"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_196042596.1"
                     /translation="MQPRELLMLSMYILVQAPVLTGLSKNQTESLTTNNKRGRRTAFYR
                     IKKHLQHDFYRIDSIKNEIHSPIKGFYMKDMKAVVVFTGKDLNIMRTEGGSGYWHARTD
                     RLNDADYLIAVRNRRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHT
                     PKAWKMLTDGQRYPVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKT
                     EKLSLNEAIERAKKDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     gene            complement(1657..1872)
                     /locus_tag="RC084_RS24840"
                     /old_locus_tag="RC084_24835"
     CDS             complement(1657..1872)
                     /locus_tag="RC084_RS24840"
                     /old_locus_tag="RC084_24835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137421.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1876..2361)
                     /locus_tag="RC084_RS24845"
                     /old_locus_tag="RC084_24840"
     CDS             complement(1876..2361)
                     /locus_tag="RC084_RS24845"
                     /old_locus_tag="RC084_24840"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001086854.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSAAMSQRTKGMLRMVSQTWLTIVLVSTLLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2396..3100)
                     /locus_tag="RC084_RS24850"
                     /old_locus_tag="RC084_24845"
                     /pseudo=""
     CDS             complement(<2396..3100)
                     /locus_tag="RC084_RS24850"
                     /old_locus_tag="RC084_24845"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3039..3362)
                     /locus_tag="RC084_RS24855"
                     /old_locus_tag="RC084_24850"
     CDS             complement(3039..3362)
                     /locus_tag="RC084_RS24855"
                     /old_locus_tag="RC084_24850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(3464..3650)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.263"
                     /coverage="87.0"
                     /evalue="2.7100000000000003e-47"
     Typing          3630..4109
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.938"
                     /coverage="93.0"
                     /evalue="3.51e-174"
     Typing          complement(1554..3049)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.583"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gcagtaatga tgctgtagta cgggtcttcg ccgtttggtt ttttcaattc tagtatcatc
       61 atccccgttc ctgactctac aacaatcgct ttgttttggc cttttttagg atctatgagc
      121 acttctgccc cagctaataa tatgctctcc aaaaagatga caatatcctc agcggaagta
      181 gctcctatct cgacacgatg cttgtcccat atatgcctaa ggccataggc tccctcgaga
      241 ctttttgtcc ttttgttgta aaaaccggaa tctcctagct tgaggatgat tttccctgcg
      301 ggaaagtctg cattcatgct tggcagttct agaaaaaatt cacttccatc acacttagcc
      361 actcgtgcat tttttgtttt cttatcatta agaacagctt caactatatc gcgtggaagt
      421 aacaagttca caaactacac ctctatagcc ttcactatta tgtttaggcg ttaaatccct
      481 ttttgaaggg ctgattctaa cactgacgta atgagcaatt tccagtaaat cttgatagaa
      541 aaaaccagtt gtatttacca taacattcct tgcccgcacc gctccggacg ggttcagcgt
      601 gaaagcggcg ttagcccggt aaaatcggca gtaaactccc cgctaaaccg cgcattctgc
      661 gcctgataaa tttcacgtgg ctgcatagcc atgcagccac gtgaattgct catgctttca
      721 atgtatatcc tcgtccaagc ccctgtttta accggtttat caaaaaacca aacagaaagc
      781 cttaccacta acaataaaag aggtaggagg actgcatttt atcgcataaa aaaacattta
      841 caacacgatt tttatcgtat agattccata aaaaatgaaa ttcactcacc tattaagggt
      901 ttctatatga aagatatgaa agctgttgtg gtttttaccg ggaaggattt gaacataatg
      961 agaactgagg gggggtcagg ctactggcat gccagaacag acaggctcaa cgatgccgat
     1021 tacctcatag cagtaagaaa cagaagggaa acgtgggcag taaaagacct ggaacacggc
     1081 acagcattcc tgatcgccaa aattaccggg tgttttaaaa gccctgatta cgacgacagg
     1141 aacgtcataa cctttgatga atacgcagaa attcacacgc caaaagcatg gaaaatgcta
     1201 accgatggtc agcgctatcc ggttgcttac ctgagcgcac aggaagcttt tttacgtatt
     1261 ggggtaacac cggaacaact ggaatggaag aaattccatc cttcatcccc atcggttcct
     1321 aatacagtga ttcctggtct ggctgaagag aaaacagaaa aactctccct taacgaggca
     1381 attgaaagag ccaaaaagga tattagcaac gcaacaggga ttgatagctc agccataaca
     1441 ataagcatca agatctgatg aagcgtgaac aacaagatag cagcctcatg ttctagaact
     1501 gaacctgtac gccagaaaca gcaagcccat gcttttccgg cgcacagatt caaagtgacg
     1561 gaccgttgta cgttcgctgt cgctgagatc gttccagctc cagcgctttc tgatgctgcg
     1621 ccgcccgttc ctgctcacga tgtgcctcta tcacgttcag ccttgtgaca accggcgcag
     1681 ctgctcgctc aaactctgca cctgcctgct caagcccgtg acgcgctcgc tcagcgccgc
     1741 gttctcccgt tgcataagac cagacatcgt ccgccattcc gcgaaggcgt tctcccactc
     1801 gtccagcctt ttcgagtagt cctgctgtag ctgctctaat gcgctcagca actgtttttc
     1861 cagctccgtc atgtgctatt tccccgccag tatcatccag ctcgaatcct ctccgaaccg
     1921 tcccgcttcc gggttcaccc tcacgcagcg gcgtctctgc tctccgcagg tcgagagctg
     1981 cacaccgctg ttcctctcgg acagcatggc ctgcgtgcgc ttctgctccc ggatggtcgt
     2041 gtaattgtcg agtatctgct gcccctgcca ccacagaata cttgcgcccg atgctgtcag
     2101 cagtgtagac accaagacga tggtcagcca cgtctggctg accatccgca gcataccttt
     2161 cgtgcgctgg ctcatggcag cggacagctt cctgtcgtgg tcgaggatgg cggcgctgat
     2221 tctcttctcg ctttcgctca gttccgctct gacagacttc tcgtgctcgc tgaatgcggc
     2281 tttcagcatc tcgccggtac tctgctgctg cgctttcgat ttctgctcta agtccttcgc
     2341 cagcgttaaa agactgttca tagatggctc ccttcagtcg gatgtttcgc cccccgtccg
     2401 ggtcggcaat gctgatgctg ctttttgtgg tgcgtaccac ctcaaaacct gcgctttcca
     2461 gcgcctcagt gacgtcctgg cgggttttca gctccccgga cgaggctaag gccagtaaac
     2521 cccgtgtaat tgcctgagcg gcttcctgct tcgtttccgg cagcgcggac ggcgtgacca
     2581 gcacccgccg gttttcaggc gcgttcgggt catgcagccc cagcctgccg ttcacgatgg
     2641 tctgccaggc atcaatgcgc ggacggtcgg cgcggtcgta atacggctgg agacgcttgc
     2701 cggtcagcag ctccgtgttc gggatcagga agttcagctc cagccgcccc ttatcctggt
     2761 gctcaaccca cagcacgctg tactggtctt tatcgagtcc gggcatcaga acccgttcaa
     2821 agctcgccat cagcttttcg cgctgcccgg gcggtaaatc cttttcggca aaggacaaga
     2881 cgccggatgt gtactttttt gcgtagggcg aggcgtcgat aagctccctg acttcttccg
     2941 gcttcccctg cagaacggtg gcgccgtcgc gctgtcggtc tttccccagc agataatcca
     3001 ccggaccggc gccaccgccg cgccctcgcg ggtgaaactt aacgatcatc gtctgcaccc
     3061 ttttccagca cggcatgccg cagccgctcg agtccggcat ctatggccat cagcgcggcg
     3121 acgacctgca cgcggtcgtg cccgctgcca ccaccggcgt taacctgccg ggcaatctgg
     3181 ttgaggttgt tccccatgcc ggcaagctga cgaagcagcg ccggcgagag cgagggaagc
     3241 ttgccggcgc gggcgggttt ctcgtccagg cacgtctggc gcatccaggc tgcaagctgt
     3301 ttaccgtcgc agcgctccag cagacggcgg tgctcatctt cggtcaccca catcgtgagc
     3361 attttgctgc gtttgtctgc caatccggcc tcctgataac gccgagacgg gcgggaaatc
     3421 ttttcccggt cggcgcggtg ttggacaagc cgcaggcgcg tcagtggttt tagcgggttt
     3481 cggggcgcag ccctgaacca gtcacgtagc gctagcggag tgtatactgg cttagtatgg
     3541 taaatcgaag tggaaattca gggaagtgct tcatgtggca ggtaaaaaat tcagctgtgg
     3601 ggcgtaagtg cgaaatgctg gagacgatga aatgacgcct cctcgctcac tcggtcgcta
     3661 cgctcctgcc gtgagactgc ggcgggcgtt acctgctcaa gaatgacgag ataaatagcg
     3721 ctcaaatcaa gaaggaaggg gaaaaggatc cggcgttgcc gtttttccat aggctccgcc
     3781 cccctgacaa gcatcacgaa atctgacgct caaatcagtg gtggcgaaac ccgacaggac
     3841 tataaagata ccaggcgttt ccccctggtg gctccctcgt gcgctctcct gttcctgcct
     3901 ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt atctcattcc acgcctgaca
     3961 ctcagttccg ggtaggcagt tcgctccaag ctggactgta tgcacgaacc ccccgttcag
     4021 tccgaccgct gcgccttatc cggtaactat cgtcttgagt ccaacccgaa aagacacgac
     4081 ttaacgccac tggcagcggc cactggtaag caggatgtgc gagagatgta tcgagagttc
     4141 ttgaagtgga ggccttagtg aggctacact ggaaggacag tatttggtga catgtctcgc
     4201 acaagactgt taccacggtt cagaaacttg ccggtttact gaaccttcga aaaaccacct
     4261 tgccgggtgg ttttttcgtt tacagggaga gagattacga cgagagtaaa acgatcacaa
     4321 ggagatctga ccgtttacca gtgatttggc ttcgttttgg tttccactga acaccaaaat
     4381 agcacttttt gcaaaaagat gagcagtgat agagttgtat tctgtatgtg tagaagggct
     4441 tggtatgtaa cctgaactct ggattggtta catatttgta ggctacttgt cggaaaccag
     4501 atttcgacaa tgcgttgtta aggtcaaaga cctgtcccga accgaaatgc taagggaatg
     4561 ccacgaacaa cactattacg aagaagtcgg ctatttagcc ggcttttttc atattatggt
     4621 atgaagtttt gtacctggat ggctcttcct atcataa
//
