LOCUS       NZ_CP133421             4593 bp    DNA     circular CON 08-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Enteritidis strain SA606
            plasmid unnamed3, complete sequence.
ACCESSION   NZ_CP133421
VERSION     NZ_CP133421.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37155315
            Assembly: GCF_031182125.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Enteritidis (Salmonella
            enteritidis)
  ORGANISM  Salmonella enterica subsp. enterica serovar Enteritidis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4593)
  AUTHORS   Wetchasirigul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2023) Veterinary public health, Faculty of
            Veterinary science, Henri-Dunant Road, Pathumwan, Bangkok, Bangkok
            10330, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 11-JUN-2022
            Assembly Method                   :: Unicycler v. v0.4.8
            Assembly Name                     :: SA606
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/07/2023 03:55:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,668
            CDSs (total)                      :: 4,551
            Genes (coding)                    :: 4,436
            CDSs (with protein)               :: 4,436
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 49 of 115
            Pseudo Genes (incomplete)         :: 79 of 115
            Pseudo Genes (internal stop)      :: 26 of 115
            Pseudo Genes (multiple problems)  :: 35 of 115
            Pseudo Genes (short protein)      :: 1 of 115
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP133421.1.
            Bacteria and source DNA available from Salmonella enterica subsp.
            enterica.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4593
                     /organism="Salmonella enterica subsp. enterica serovar
                     Enteritidis"
                     /mol_type="genomic DNA"
                     /strain="SA606"
                     /serovar="Enteritidis"
                     /isolation_source="Human stool"
                     /sub_species="enterica"
                     /db_xref="taxon:149539"
                     /plasmid="unnamed3"
                     /geo_loc_name="Thailand: Chiang Mai province"
                     /lat_lon="18.793867 N 98.997116 E"
                     /collection_date="2007"
                     /collected_by="Chulalongkorn University"
     gene            complement(join(4505..4593,1..235))
                     /locus_tag="RC082_RS23315"
                     /old_locus_tag="RC082_23315"
     CDS             complement(join(4505..4593,1..235))
                     /locus_tag="RC082_RS23315"
                     /old_locus_tag="RC082_23315"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001677263.1"
                     /translation="MLTIRVSDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGHWSSIDRVHVVAALMAIEGELRQLRQAVREQGGR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            298..489
                     /locus_tag="RC082_RS23320"
                     /old_locus_tag="RC082_23320"
     CDS             298..489
                     /locus_tag="RC082_RS23320"
                     /old_locus_tag="RC082_23320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001677262.1"
                     /translation="MTKQEKTAINMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1159..1308
                     /locus_tag="RC082_RS23325"
                     /old_locus_tag="RC082_23325"
     CDS             1159..1308
                     /locus_tag="RC082_RS23325"
                     /old_locus_tag="RC082_23325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001326446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032194431.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPERHVKTPLAAAIGNRLEELVLK
                     LCAG"
                     /name="hypothetical protein"
     gene            1500..2339
                     /locus_tag="RC082_RS23330"
                     /old_locus_tag="RC082_23330"
     CDS             1500..2339
                     /locus_tag="RC082_RS23330"
                     /old_locus_tag="RC082_23330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001354646.1"
                     /translation="MLTLFIFFVLLIAACFFCFAPPRRGYDRNEIIPYKIKLSINKYRL
                     YIYSSGKVRQYLLFLVILSLYYSIAEPFKSELIKNISYSLMAAFIFDTGLNFSKENITK
                     GVISTRWHNDLYSSFERMKAINKIYYPSNKEINTEGLSKAITSSLFNDDANSFAKRDFR
                     LMWDLSSEKYLSYKEIIIRKGDKLDAVCLRFINDDYKFLVNFNRDEEVFKYFPSIMQPS
                     LKTYRALSRLVNSIKDPSRFKFTTESLEMELLEYLELRNELFNDIEEVMGSYAQRAP"
                     /name="hypothetical protein"
     gene            complement(3027..3260)
                     /locus_tag="RC082_RS23335"
                     /old_locus_tag="RC082_23335"
     CDS             complement(3027..3260)
                     /locus_tag="RC082_RS23335"
                     /old_locus_tag="RC082_23335"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137388.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHAVTQQNNA
                     ILNERVVNLSQQVQLLAGQVDRLSRLFITNNR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3267..3827)
                     /locus_tag="RC082_RS23340"
                     /old_locus_tag="RC082_23340"
     CDS             complement(3267..3827)
                     /locus_tag="RC082_RS23340"
                     /old_locus_tag="RC082_23340"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067488.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKQQLDTLSTTVSTQLSTTEAELSRQQKNLLWQVIKGRVLFPALTA
                     LSVTGGIFLGCWGLIQWQESRIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     Typing          complement(578..662)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.03e-37"
     Typing          673..1228
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.907"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          complement(2930..4515)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gaacccggtc aatcgaagac cagtggccgc tgttcacctt ccgggctgtc tggttcagat
       61 tgttcccgat ggcagccaga tgccgcagca atggcggcga tagtgtcggc agttttcctg
      121 tgcgcgcaac cggctccccc agacagaccc gccgcatcca ttctgccagt cgtttaccct
      181 cgcagcgttc cagtaaccgg gcgtgctcct catcgctaac ccgtattgtg agcatcttct
      241 cgcgtttcat cggtatcatt ccccctaaaa aatcccctat taaggagcct taagaccatg
      301 accaaacagg aaaaaacagc cattaacatg gcccgcttta tcagaagcca gacgctgacc
      361 ctgctggaaa aactcaacga gctggacgcg gacgaacagg cagacatctg cgaatcactt
      421 cacgaccacg ccgacgaact ctaccgtagt tgcctcgcac gcttcggcga tgacggtgaa
      481 agcaactgaa acatgcagct cccggagacg ttcacagctt gcctgtgagc ggatgccggg
      541 agcagacaag cccgtcaggg cgcgtcagcg ggttttagcg ggtgtcgggg cgcagccctg
      601 acccagtcac gtagcgatag cggagtgtat actggcttaa ctatgtggca tcagtgcgga
      661 ttataagaaa agtgcaccat atgcggtgtg aaataccgca cagatgcgta aggagaaaat
      721 gccgcatcag gcgctcttcc gcttcctcgc tcactgactc gctacgctcg gtcgttcggc
      781 tgcggcgagc ggtatcagct cactcaaaga cggtgatgcg gttatccaca gaatcagggg
      841 ataacgccaa aagaaacatg tgagcaaaag gccaggaaca ggaagaaggc cgcgccgctg
      901 gcgtttttcc ataggctccg cccccctgac gagcatcaca aaaacagatg ctcaagtcag
      961 aggtggcgaa acccgacagg actataaaga taccaggcgt ttccccctgg aagctccctc
     1021 gtgcgctctc ctgttccgac cctgccgctt accggatacc tgtccgcctt tctcccttcg
     1081 ggaagcgtgg cgctttctca tagctcacgc tgttggtatc tcggcccggt gtaggtcgtt
     1141 cgctccaagc tgggctgtgt gcacgaaccc cccgttcagc ccgaccgctg cgccttatcc
     1201 ggtaactatc gtcttgagtc caacccggaa agacacgtaa aaacgccact ggcagcagcc
     1261 attggtaacc gtttagagga gttagtcttg aagttatgcg ccggttaagg ctaaactgaa
     1321 aggacagatt tggtggctgt gctcctccaa gccagttacc ttggttcaaa gagttgctgc
     1381 tctgagaacc ttcgaaaagc cgccttgctg ggcggttttt tcgtttacgg acaagactac
     1441 cttcaggatc gttagatctc aagacaatca tgcatagtga gcatacacag gagccgaact
     1501 tgcttacact gttcatcttt tttgttttat taatagctgc atgtttcttt tgttttgctc
     1561 caccacgaag aggatatgac agaaatgaga tcattccata caaaataaaa ctatcaataa
     1621 ataaatatcg cctttacata tactcatcgg gaaaggtaag acaatacctt ttatttttag
     1681 ttattttatc actgtactac tccatagcgg aaccatttaa gtctgagtta ataaaaaaca
     1741 tatcatattc actgatggct gcatttattt ttgatacagg gcttaatttt agcaaggaga
     1801 atataactaa aggagtgatt tcaacaaggt ggcataatga cctatattca tcatttgaga
     1861 gaatgaaagc aattaataaa atttactacc catccaacaa agagataaac acagaaggtc
     1921 tatccaaagc catcacatca tctcttttca atgatgacgc gaactcgttc gcaaagagag
     1981 attttcgctt gatgtgggac ttatcttctg aaaaatatct ttcctataaa gaaataataa
     2041 taagaaaagg cgataagctt gacgctgtat gcttgagatt tataaatgat gactacaagt
     2101 ttttagttaa tttcaacaga gatgaagagg ttttcaaata ctttccatct ataatgcaac
     2161 cttcactcaa aacatataga gcgttatcaa gactagtaaa ctcaatcaaa gatccttcta
     2221 gatttaagtt cacgacagag tcattagaaa tggagttact agaatactta gagttaagaa
     2281 atgaattatt caatgacata gaagaagtaa tgggtagcta tgctcagagg gcaccatagt
     2341 tcatgatagc cctcgatagt acttacttat atttttagag aggtttaagt gtaagtagag
     2401 ggagtaacac ctggtttttc agcatccact ccaatgaatg ctgacaccga tacgcgataa
     2461 ttctctttat cgtagcaaaa tcatcctcca gattgcggtt gagaataggt tcatggtgcg
     2521 caatacgatt gcgcagtttt ctcacgggac ttgttagcag taatgcttcc ccccggggac
     2581 aaacgacaga gatatacaac aaaggcccgc aattaaaata ctccgtattt accataacgt
     2641 cgcattgcgc gtaccgctta aacgcgttca gcgcgatcac ggcagcagac aggtaaaaac
     2701 agcaacaaac cacccgaaaa actgccgcga tcgcgcctgg taaattttaa cctcatgcat
     2761 agttatgcgc gaaactgaat gacgatcagt ttcgcacgtt ccagccgtcg aacggggcaa
     2821 aatggggagg tttggatatt gttaatgcta atgtacgtac attaacattg gcgccatccg
     2881 ggtagggcgt gccacaaact ggctcgattt cagggggtac cccggtcaca tccccattga
     2941 cgggccacgc cagatccgcg cttcgggttc ctgctcttca tgccagcgcc gggcaagctc
     3001 ctgcgcctga cgctcctgtt catcccttat ctgttgttcg tgataaataa ccgactcaag
     3061 cggtcgactt gtccggctaa tagctgcacc tgctgactca agttcacgac acgctcgttc
     3121 agtatcgcgt tgttctgttg cgtaaccgcg tgcatcttct gcaattctgc gaaggcgctc
     3181 tcccactcgt tcagccgccg catatagtcc tgttgcaaat gctctaaggc gttcagcaaa
     3241 tgcccttcca gttccgtcat actcgtttac tccctgacca gcctcacggc gttcttgtcg
     3301 cccaccgtcc aggtgttttc ccctttcacc ccgtccggca gcaccagaaa tttcccgttc
     3361 tcgccattga cgaacgtcac cccccaggtt tttgcctcga gtttcgccag cgtgttttcc
     3421 tgctctctga tggtcaagat atttttcgca atcctgcttt cctgccactg aatcagcccc
     3481 cagcacccca ggaaaatgcc gcccgtgacg ctgagcgcgg tcagcgccgg aaacagtacc
     3541 cgccctttga tcacctgcca gagcaggttt ttctgctgcc gggacagttc ggcctctgtg
     3601 gtgctgagct gcgtgctcac ggtggtgctc agcgtatcca gttgctgttt cacggatgtt
     3661 gtatgttcgc tgatagcgtc tctgattttc tgcctgttta agctcagtgc cttgtctaca
     3721 gactcttcta gcttcctgaa ctcgctgttc agcatgttct cggtagaagc ggctcgctct
     3781 ttcagtttct tctcgaagtc cgttcccatt tgtaaaagat tgctcataca gcgccccctt
     3841 tagcctgaga ttccgccccc cctccgggtc ggcaatactg atactgcttc tggttgtcct
     3901 caccacctca aaacctgccg ctgtgagcgc ctcagtgaca tcctgacgcg tttttattgc
     3961 tccggcacgg taaagcgcct caagaccccg tgtaatcgct tctgcggcct cctgtttcgc
     4021 ttttggcaga ttattcggtg tgacaagcgt ccgtctgttc tccggtgcgt tcgggtcacg
     4081 cagcccgtaa tgatgattaa ccagcgtctg ccaggcattt atcctcggcc tgtccgcacg
     4141 gtcgtagtac ggctggaggc gcttaccgct ctgtagttcc atgttcggaa tgacaaaatt
     4201 cagttcgagc cgccccttat cctggtgttc cacccagaga atgctgtact ggtctttttc
     4261 gagaccgggc ataagaacac gctcaaagct cgtcatcact ctttcgcgtt cacccggcgg
     4321 taactccttc tccgcgaacg acagaacgcc tgacgtgtat ttcttcgaaa atggcgtggc
     4381 atcaatgagt tcccggattt cttccgggtt accccggagc accgttgcgc cttcgcggtt
     4441 acgctcccgc cccagcaggt aatcgaccgg gccacttcca ccgcctttcc ccctggcatg
     4501 aaatttaact atcatcccgt cccccctgtt ccctgacagc ctgccgcaac tggcgcaatt
     4561 caccctcgat ggccatcaga gcggccacca cat
//
