LOCUS       NZ_CP133400             4657 bp    DNA     circular CON 08-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Rissen strain D15
            plasmid unnamed3, complete sequence.
ACCESSION   NZ_CP133400
VERSION     NZ_CP133400.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37147803
            Assembly: GCF_031174645.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Rissen
  ORGANISM  Salmonella enterica subsp. enterica serovar Rissen
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Wetchasirigul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2023) Veterinary Public Health, Faculty of
            Veterinary Science, Henri-Dunant Road, Pathumwan, Bangkok, Bangkok
            10330, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 11-JUN-2022
            Assembly Method                   :: Unicycler v. v0.4.8
            Assembly Name                     :: D15
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 09/07/2023 04:05:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,825
            CDSs (total)                      :: 4,705
            Genes (coding)                    :: 4,579
            CDSs (with protein)               :: 4,579
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 53 of 126
            Pseudo Genes (incomplete)         :: 92 of 126
            Pseudo Genes (internal stop)      :: 28 of 126
            Pseudo Genes (multiple problems)  :: 41 of 126
            Pseudo Genes (short protein)      :: 1 of 126
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP133400.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Salmonella enterica subsp. enterica serovar
                     Rissen"
                     /mol_type="genomic DNA"
                     /strain="D15"
                     /serovar="Rissen"
                     /isolation_source="Swine intestine"
                     /sub_species="enterica"
                     /db_xref="taxon:399587"
                     /plasmid="unnamed3"
                     /geo_loc_name="Thailand: Roi et province"
                     /lat_lon="16.056247 N 103.653095 E"
                     /collection_date="2010"
                     /collected_by="Chulalongkorn University"
     gene            complement(join(4366..4657,1..1208))
                     /locus_tag="RCO23_RS24110"
                     /old_locus_tag="RCO23_24110"
     CDS             complement(join(4366..4657,1..1208))
                     /locus_tag="RCO23_RS24110"
                     /old_locus_tag="RCO23_24110"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_023138584.1"
                     /translation="MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELID
                     ASPYAKKYTSGVLSFAEKDLPPGQREKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLE
                     LNFLIPNTELLTGKRLQPYYDRADRPRIDAWQTIVNGRLGLHDPNAPENRRVLVTPSAL
                     PETKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGRN
                     IRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQSGTERKREENQRRH
                     PRPRQEAVRCHEPAHERYAADGQPDVADHRLGVYTADSIGRKYSVVAGAADTRQLHDHP
                     GAEAHAGHAVREEQRCAALDLRRAETPLREGEPGSGTVRRGFELDDTGGEIAHDGAGKT
                     VAERIRAATAGLLEKAGRVGERLRGMADDVWSYATGERGAERARHGLEQAGAEFERAAA
                     PVVTRLNVIEAHREQERAAQHQKALELERSQRQRTYNGPSL"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1198..1521)
                     /locus_tag="RCO23_RS24115"
                     /old_locus_tag="RCO23_24115"
     CDS             complement(1198..1521)
                     /locus_tag="RCO23_RS24115"
                     /old_locus_tag="RCO23_24115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(2768..3247)
                     /locus_tag="RCO23_RS24120"
                     /old_locus_tag="RCO23_24120"
     CDS             complement(2768..3247)
                     /locus_tag="RCO23_RS24120"
                     /old_locus_tag="RCO23_24120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023138585.1"
                     /translation="MNLLLPRDIVEAVLNDKKTKNARVAKCDGSEFFLELPSMNADFPA
                     GKIILKLGDSGFYNKRTKSLEGAYGLRHIWDKHRVEIGATSAEDIVIFLESILLAGAEV
                     LIDPKKGQNKAIVVESGTGMMILELKKPNGEDPYYSIITAYDRKSHPGTKLHTII"
                     /name="hypothetical protein"
     gene            3507..4274
                     /locus_tag="RCO23_RS24125"
                     /old_locus_tag="RCO23_24125"
     CDS             3507..4274
                     /locus_tag="RCO23_RS24125"
                     /old_locus_tag="RCO23_24125"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_196042596.1"
                     /translation="MQPRELLMLSMYILVQAPVLTGLSKNQTESLTTNNKRGRRTAFYR
                     IKKHLQHDFYRIDSIKNEIHSPIKGFYMKDMKAVVVFTGKDLNIMRTEGGSGYWHARTD
                     RLNDADYLIAVRNRRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHT
                     PKAWKMLTDGQRYPVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKT
                     EKLSLNEAIERAKKDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     Typing          complement(1623..1809)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.263"
                     /coverage="87.0"
                     /evalue="2.7100000000000003e-47"
     Typing          1789..2268
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.938"
                     /coverage="93.0"
                     /evalue="3.51e-174"
     Typing          complement(4..1208)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.542"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cgctcagcaa ctgtttttcc agctccgtca tgtgctattt ccccgccagt atcatccagc
       61 tcgaatcctc tccgaaccgt cccgcttccg ggttcaccct cacgcagcgg cgtctctgct
      121 ctccgcaggt cgagagctgc acaccgctgt tcctctcgga cagcatggcc tgcgtgcgct
      181 tctgctcccg gatggtcgtg taattgtcga gtatctgctg cccctgccac cacagaatac
      241 ttgcgcccga tgctgtcagc agtgtagaca ccaagacgat ggtcagccac gtctggctga
      301 ccatccgcag catacctttc gtgcgctggc tcatggcagc ggacagcttc ctgtcgtggt
      361 cgaggatggc ggcgctgatt ctcttctcgc tttcgctcag ttccgctctg acagacttct
      421 cgtgctcgct gaatgcggct ttcagcatct cgccggtact ctgctgctgc gctttcgatt
      481 tctgctctaa gtccttcgcc agcgttaaaa gactgttcat agatggctcc cttcagtcgg
      541 atgtttcgcc ccccgtccgg gtcggcaatg ctgatgctgc tttttgtggt gcgtaccacc
      601 tcaaaacctg cgctttccag cgcctcagtg acgtcctggc gggttttcag ctccccggac
      661 gaggctaagg ccagtaaacc ccgtgtaatt gcctgagcgg cttcctgctt cgtttccggc
      721 agcgcggacg gcgtgaccag cacccgccgg ttttcaggcg cgttcgggtc atgcagcccc
      781 agcctgccgt tcacgatggt ctgccaggca tcaatgcgcg gacggtcggc gcggtcgtaa
      841 tacggctgga gacgcttgcc ggtcagcagc tccgtgttcg ggatcaggaa gttcagctcc
      901 agccgcccct tatcctggtg ctcaacccac agcacgctgt actggtcttt atcgagtccg
      961 ggcatcagaa cccgttcaaa gctcgccatc agcttttcgc gctgcccggg cggtaaatcc
     1021 ttttcggcaa aggacaagac gccggatgtg tacttttttg cgtagggcga ggcgtcgata
     1081 agctccctga cttcttccgg cttcccctgc agaacggtgg cgccgtcgcg ctgtcggtct
     1141 ttccccagca gataatccac cggaccggcg ccaccgccgc gccctcgcgg gtgaaactta
     1201 acgatcatcg tctgcaccct tttccagcac ggcatgccgc agccgctcga gtccggcatc
     1261 tatggccatc agcgcggcga cgacctgcac gcggtcgtgc ccgctgccac caccggcgtt
     1321 aacctgccgg gcaatctggt tgaggttgtt ccccatgccg gcaagctgac gaagcagcgc
     1381 cggcgagagc gagggaagct tgccggcgcg ggcgggtttc tcgtccaggc acgtctggcg
     1441 catccaggct gcaagctgtt taccgtcgca gcgctccagc agacggcggt gctcatcttc
     1501 ggtcacccac atcgtgagca ttttgctgcg tttgtctgcc aatccggcct cctgataacg
     1561 ccgagacggg cgggaaatct tttcccggtc ggcgcggtgt tggacaagcc gcaggcgcgt
     1621 cagtggtttt agcgggtttc ggggcgcagc cctgaaccag tcacgtagcg ctagcggagt
     1681 gtatactggc ttagtatggt aaatcgaagt ggaaattcag ggaagtgctt catgtggcag
     1741 gtaaaaaatt cagctgtggg gcgtaagtgc gaaatgctgg agacgatgaa atgacgcctc
     1801 ctcgctcact cggtcgctac gctcctgccg tgagactgcg gcgggcgtta cctgctcaag
     1861 aatgacgaga taaatagcgc tcaaatcaag aaggaagggg aaaaggatcc ggcgttgccg
     1921 tttttccata ggctccgccc ccctgacaag catcacgaaa tctgacgctc aaatcagtgg
     1981 tggcgaaacc cgacaggact ataaagatac caggcgtttc cccctggtgg ctccctcgtg
     2041 cgctctcctg ttcctgcctt tcggtttacc ggtgtcattc cgctgttatg gccgcgttta
     2101 tctcattcca cgcctgacac tcagttccgg gtaggcagtt cgctccaagc tggactgtat
     2161 gcacgaaccc cccgttcagt ccgaccgctg cgccttatcc ggtaactatc gtcttgagtc
     2221 caacccgaaa agacacgact taacgccact ggcagcggcc actggtaagc aggatgtgcg
     2281 agagatgtat cgagagttct tgaagtggag gccttagtga ggctacactg gaaggacagt
     2341 atttggtgac atgtctcgca caagactgtt accacggttc agaaacttgc cggtttactg
     2401 aaccttcgaa aaaccacctt gccgggtggt tttttcgttt acagggagag agattacgac
     2461 gagagtaaaa cgatcacaag gagatctgac cgtttaccag tgatttggct tcgttttggt
     2521 ttccactgaa caccaaaata gcactttttg caaaaagatg agcagtgata gagttgtatt
     2581 ctgtatgtgt agaagggctt ggtatgtaac ctgaactctg gattggttac atatttgtag
     2641 gctacttgtc ggaaaccaga tttcgacaat gcgttgttaa ggtcaaagac ctgtcccgaa
     2701 ccgaaatgct aagggaatgc cacgaacaac actattacga agaagtcggc tatttagccg
     2761 gcttttttca tattatggta tgaagttttg tacctggatg gctcttccta tcataagcag
     2821 taatgatgct gtagtacggg tcttcgccgt ttggtttttt caattctagt atcatcatcc
     2881 ccgttcctga ctctacaaca atcgctttgt tttggccttt tttaggatct atgagcactt
     2941 ctgccccagc taataatatg ctctccaaaa agatgacaat atcctcagcg gaagtagctc
     3001 ctatctcgac acgatgcttg tcccatatat gcctaaggcc ataggctccc tcgagacttt
     3061 ttgtcctttt gttgtaaaaa ccggaatctc ctagcttgag gatgattttc cctgcgggaa
     3121 agtctgcatt catgcttggc agttctagaa aaaattcact tccatcacac ttagccactc
     3181 gtgcattttt tgttttctta tcattaagaa cagcttcaac tatatcgcgt ggaagtaaca
     3241 agttcacaaa ctacacctct atagccttca ctattatgtt taggcgttaa atcccttttt
     3301 gaagggctga ttctaacact gacgtaatga gcaatttcca gtaaatcttg atagaaaaaa
     3361 ccagttgtat ttaccataac attccttgcc cgcaccgctc cggacgggtt cagcgtgaaa
     3421 gcggcgttag cccggtaaaa tcggcagtaa actccccgct aaaccgcgca ttctgcgcct
     3481 gataaatttc acgtggctgc atagccatgc agccacgtga attgctcatg ctttcaatgt
     3541 atatcctcgt ccaagcccct gttttaaccg gtttatcaaa aaaccaaaca gaaagcctta
     3601 ccactaacaa taaaagaggt aggaggactg cattttatcg cataaaaaaa catttacaac
     3661 acgattttta tcgtatagat tccataaaaa atgaaattca ctcacctatt aagggtttct
     3721 atatgaaaga tatgaaagct gttgtggttt ttaccgggaa ggatttgaac ataatgagaa
     3781 ctgagggggg gtcaggctac tggcatgcca gaacagacag gctcaacgat gccgattacc
     3841 tcatagcagt aagaaacaga agggaaacgt gggcagtaaa agacctggaa cacggcacag
     3901 cattcctgat cgccaaaatt accgggtgtt ttaaaagccc tgattacgac gacaggaacg
     3961 tcataacctt tgatgaatac gcagaaattc acacgccaaa agcatggaaa atgctaaccg
     4021 atggtcagcg ctatccggtt gcttacctga gcgcacagga agctttttta cgtattgggg
     4081 taacaccgga acaactggaa tggaagaaat tccatccttc atccccatcg gttcctaata
     4141 cagtgattcc tggtctggct gaagagaaaa cagaaaaact ctcccttaac gaggcaattg
     4201 aaagagccaa aaaggatatt agcaacgcaa cagggattga tagctcagcc ataacaataa
     4261 gcatcaagat ctgatgaagc gtgaacaaca agatagcagc ctcatgttct agaactgaac
     4321 ctgtacgcca gaaacagcaa gcccatgctt ttccggcgca cagattcaaa gtgacggacc
     4381 gttgtacgtt cgctgtcgct gagatcgttc cagctccagc gctttctgat gctgcgccgc
     4441 ccgttcctgc tcacgatgtg cctctatcac gttcagcctt gtgacaaccg gcgcagctgc
     4501 tcgctcaaac tctgcacctg cctgctcaag cccgtgacgc gctcgctcag cgccgcgttc
     4561 tcccgttgca taagaccaga catcgtccgc cattccgcga aggcgttctc ccactcgtcc
     4621 agccttttcg agtagtcctg ctgtagctgc tctaatg
//
