LOCUS       NZ_CP133288             4657 bp    DNA     circular CON 08-SEP-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Rissen strain D7 plasmid
            p_unname3, complete sequence.
ACCESSION   NZ_CP133288
VERSION     NZ_CP133288.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37128092
            Assembly: GCF_030980035.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Rissen
  ORGANISM  Salmonella enterica subsp. enterica serovar Rissen
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4657)
  AUTHORS   Wetchasirigul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2023) Veterinary Public Health, Faculty of
            Veterinary Science, Henri-Dunant Road, Pathumwan, Bangkok, Bangkok
            10330, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 12-JUN-2022
            Assembly Method                   :: Unicycler v. v0.4.8
            Assembly Name                     :: D7
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/30/2023 15:53:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,821
            CDSs (total)                      :: 4,701
            Genes (coding)                    :: 4,576
            CDSs (with protein)               :: 4,576
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 125
            CDSs (without protein)            :: 125
            Pseudo Genes (ambiguous residues) :: 0 of 125
            Pseudo Genes (frameshifted)       :: 53 of 125
            Pseudo Genes (incomplete)         :: 91 of 125
            Pseudo Genes (internal stop)      :: 28 of 125
            Pseudo Genes (multiple problems)  :: 41 of 125
            Pseudo Genes (short protein)      :: 1 of 125
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP133288.1.
            Bacteria and source DNA available from Salmonella enterica subsp.
            enterica.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4657
                     /organism="Salmonella enterica subsp. enterica serovar
                     Rissen"
                     /mol_type="genomic DNA"
                     /strain="D7"
                     /serovar="Rissen"
                     /isolation_source="Swine liver"
                     /sub_species="enterica"
                     /db_xref="taxon:399587"
                     /plasmid="p_unname3"
                     /geo_loc_name="Thailand: Roi et province"
                     /lat_lon="16.05382 N 103.652004 E"
                     /collection_date="2010"
                     /collected_by="Chulalongkorn University"
     gene            410..733
                     /locus_tag="RCH04_RS24080"
                     /old_locus_tag="RCH04_24080"
     CDS             410..733
                     /locus_tag="RCH04_RS24080"
                     /old_locus_tag="RCH04_24080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            942..>1376
                     /locus_tag="RCH04_RS24085"
                     /old_locus_tag="RCH04_24085"
                     /pseudo=""
     CDS             942..>1376
                     /locus_tag="RCH04_RS24085"
                     /old_locus_tag="RCH04_24085"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1411..1896
                     /locus_tag="RCH04_RS24090"
                     /old_locus_tag="RCH04_24090"
     CDS             1411..1896
                     /locus_tag="RCH04_RS24090"
                     /old_locus_tag="RCH04_24090"
                     /inference="COORDINATES: protein motif:HMM:NF016710.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001086854.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSAAMSQRTKGMLRMVSQTWLTIVLVSTLLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            1900..2115
                     /locus_tag="RCH04_RS24095"
                     /old_locus_tag="RCH04_24095"
     CDS             1900..2115
                     /locus_tag="RCH04_RS24095"
                     /old_locus_tag="RCH04_24095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137421.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSEQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2314..3081)
                     /locus_tag="RCH04_RS24100"
                     /old_locus_tag="RCH04_24100"
     CDS             complement(2314..3081)
                     /locus_tag="RCH04_RS24100"
                     /old_locus_tag="RCH04_24100"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_196042596.1"
                     /translation="MQPRELLMLSMYILVQAPVLTGLSKNQTESLTTNNKRGRRTAFYR
                     IKKHLQHDFYRIDSIKNEIHSPIKGFYMKDMKAVVVFTGKDLNIMRTEGGSGYWHARTD
                     RLNDADYLIAVRNRRETWAVKDLEHGTAFLIAKITGCFKSPDYDDRNVITFDEYAEIHT
                     PKAWKMLTDGQRYPVAYLSAQEAFLRIGVTPEQLEWKKFHPSSPSVPNTVIPGLAEEKT
                     EKLSLNEAIERAKKDISNATGIDSSAITISIKI"
                     /name="hypothetical protein"
     gene            3341..3820
                     /locus_tag="RCH04_RS24105"
                     /old_locus_tag="RCH04_24105"
     CDS             3341..3820
                     /locus_tag="RCH04_RS24105"
                     /old_locus_tag="RCH04_24105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001050742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023138585.1"
                     /translation="MNLLLPRDIVEAVLNDKKTKNARVAKCDGSEFFLELPSMNADFPA
                     GKIILKLGDSGFYNKRTKSLEGAYGLRHIWDKHRVEIGATSAEDIVIFLESILLAGAEV
                     LIDPKKGQNKAIVVESGTGMMILELKKPNGEDPYYSIITAYDRKSHPGTKLHTII"
                     /name="hypothetical protein"
     Typing          123..306
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="85.561"
                     /coverage="86.0"
                     /evalue="2.7100000000000003e-47"
     Typing          complement(4131..4611)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.178"
                     /coverage="94.0"
                     /evalue="2.78e-170"
     Typing          724..2219
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.583"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tatggaaaaa cggcaacgcc ggatcctttt ccccttcctt cttgatttga gcgctattta
       61 tctcgtcatt cttgagcagg taacgcccgc cgcagtctca cggcaggagc gtagcgaccg
      121 agtgagcgag gaggcgtcat ttcatcgtct ccagcatttc gcacttacgc cccacagctg
      181 aattttttac ctgccacatg aagcacttcc ctgaatttcc acttcgattt accatactaa
      241 gccagtatac actccgctag cgctacgtga ctggttcagg gctgcgcccc gaaacccgct
      301 aaaaccactg acgcgcctgc ggcttgtcca acaccgcgcc gaccgggaaa agatttcccg
      361 cccgtctcgg cgttatcagg aggccggatt ggcagacaaa cgcagcaaaa tgctcacgat
      421 gtgggtgacc gaagatgagc accgccgtct gctggagcgc tgcgacggta aacagcttgc
      481 agcctggatg cgccagacgt gcctggacga gaaacccgcc cgcgccggca agcttccctc
      541 gctctcgccg gcgctgcttc gtcagcttgc cggcatgggg aacaacctca accagattgc
      601 ccggcaggtt aacgccggtg gtggcagcgg gcacgaccgc gtgcaggtcg tcgccgcgct
      661 gatggccata gatgccggac tcgagcggct gcggcatgcc gtgctggaaa agggtgcaga
      721 cgatgatcgt taagtttcac ccgcgagggc gcggcggtgg cgccggtccg gtggattatc
      781 tgctggggaa agaccgacag cgcgacggcg ccaccgttct gcaggggaag ccggaagaag
      841 tcagggagct tatcgacgcc tcgccctacg caaaaaagta cacatccggc gtcttgtcct
      901 ttgccgaaaa ggatttaccg cccgggcagc gcgaaaagct gatggcgagc tttgaacggg
      961 ttctgatgcc cggactcgat aaagaccagt acagcgtgct gtgggttgag caccaggata
     1021 aggggcggct ggagctgaac ttcctgatcc cgaacacgga gctgctgacc ggcaagcgtc
     1081 tccagccgta ttacgaccgc gccgaccgtc cgcgcattga tgcctggcag accatcgtga
     1141 acggcaggct ggggctgcat gacccgaacg cgcctgaaaa ccggcgggtg ctggtcacgc
     1201 cgtccgcgct gccggaaacg aagcaggaag ccgctcaggc aattacacgg ggtttactgg
     1261 ccttagcctc gtccggggag ctgaaaaccc gccaggacgt cactgaggcg ctggaaagcg
     1321 caggttttga ggtggtacgc accacaaaaa gcagcatcag cattgccgac ccggacgggg
     1381 ggcgaaacat ccgactgaag ggagccatct atgaacagtc ttttaacgct ggcgaaggac
     1441 ttagagcaga aatcgaaagc gcagcagcag agtaccggcg agatgctgaa agccgcattc
     1501 agcgagcacg agaagtctgt cagagcggaa ctgagcgaaa gcgagaagag aatcagcgcc
     1561 gccatcctcg accacgacag gaagctgtcc gctgccatga gccagcgcac gaaaggtatg
     1621 ctgcggatgg tcagccagac gtggctgacc atcgtcttgg tgtctacact gctgacagca
     1681 tcgggcgcaa gtattctgtg gtggcagggg cagcagatac tcgacaatta cacgaccatc
     1741 cgggagcaga agcgcacgca ggccatgctg tccgagagga acagcggtgt gcagctctcg
     1801 acctgcggag agcagagacg ccgctgcgtg agggtgaacc cggaagcggg acggttcgga
     1861 gaggattcga gctggatgat actggcgggg aaatagcaca tgacggagct ggaaaaacag
     1921 ttgctgagcg cattagagca gctacagcag gactactcga aaaggctgga cgagtgggag
     1981 aacgccttcg cggaatggcg gacgatgtct ggtcttatgc aacgggagaa cgcggcgctg
     2041 agcgagcgcg tcacgggctt gagcaggcag gtgcagagtt tgagcgagca gctgcgccgg
     2101 ttgtcacaag gctgaacgtg atagaggcac atcgtgagca ggaacgggcg gcgcagcatc
     2161 agaaagcgct ggagctggaa cgatctcagc gacagcgaac gtacaacggt ccgtcacttt
     2221 gaatctgtgc gccggaaaag catgggcttg ctgtttctgg cgtacaggtt cagttctaga
     2281 acatgaggct gctatcttgt tgttcacgct tcatcagatc ttgatgctta ttgttatggc
     2341 tgagctatca atccctgttg cgttgctaat atcctttttg gctctttcaa ttgcctcgtt
     2401 aagggagagt ttttctgttt tctcttcagc cagaccagga atcactgtat taggaaccga
     2461 tggggatgaa ggatggaatt tcttccattc cagttgttcc ggtgttaccc caatacgtaa
     2521 aaaagcttcc tgtgcgctca ggtaagcaac cggatagcgc tgaccatcgg ttagcatttt
     2581 ccatgctttt ggcgtgtgaa tttctgcgta ttcatcaaag gttatgacgt tcctgtcgtc
     2641 gtaatcaggg cttttaaaac acccggtaat tttggcgatc aggaatgctg tgccgtgttc
     2701 caggtctttt actgcccacg tttcccttct gtttcttact gctatgaggt aatcggcatc
     2761 gttgagcctg tctgttctgg catgccagta gcctgacccc ccctcagttc tcattatgtt
     2821 caaatccttc ccggtaaaaa ccacaacagc tttcatatct ttcatataga aacccttaat
     2881 aggtgagtga atttcatttt ttatggaatc tatacgataa aaatcgtgtt gtaaatgttt
     2941 ttttatgcga taaaatgcag tcctcctacc tcttttattg ttagtggtaa ggctttctgt
     3001 ttggtttttt gataaaccgg ttaaaacagg ggcttggacg aggatataca ttgaaagcat
     3061 gagcaattca cgtggctgca tggctatgca gccacgtgaa atttatcagg cgcagaatgc
     3121 gcggtttagc ggggagttta ctgccgattt taccgggcta acgccgcttt cacgctgaac
     3181 ccgtccggag cggtgcgggc aaggaatgtt atggtaaata caactggttt tttctatcaa
     3241 gatttactgg aaattgctca ttacgtcagt gttagaatca gcccttcaaa aagggattta
     3301 acgcctaaac ataatagtga aggctataga ggtgtagttt gtgaacttgt tacttccacg
     3361 cgatatagtt gaagctgttc ttaatgataa gaaaacaaaa aatgcacgag tggctaagtg
     3421 tgatggaagt gaattttttc tagaactgcc aagcatgaat gcagactttc ccgcagggaa
     3481 aatcatcctc aagctaggag attccggttt ttacaacaaa aggacaaaaa gtctcgaggg
     3541 agcctatggc cttaggcata tatgggacaa gcatcgtgtc gagataggag ctacttccgc
     3601 tgaggatatt gtcatctttt tggagagcat attattagct ggggcagaag tgctcataga
     3661 tcctaaaaaa ggccaaaaca aagcgattgt tgtagagtca ggaacgggga tgatgatact
     3721 agaattgaaa aaaccaaacg gcgaagaccc gtactacagc atcattactg cttatgatag
     3781 gaagagccat ccaggtacaa aacttcatac cataatatga aaaaagccgg ctaaatagcc
     3841 gacttcttcg taatagtgtt gttcgtggca ttcccttagc atttcggttc gggacaggtc
     3901 tttgacctta acaacgcatt gtcgaaatct ggtttccgac aagtagccta caaatatgta
     3961 accaatccag agttcaggtt acataccaag cccttctaca catacagaat acaactctat
     4021 cactgctcat ctttttgcaa aaagtgctat tttggtgttc agtggaaacc aaaacgaagc
     4081 caaatcactg gtaaacggtc agatctcctt gtgatcgttt tactctcgtc gtaatctctc
     4141 tccctgtaaa cgaaaaaacc acccggcaag gtggtttttc gaaggttcag taaaccggca
     4201 agtttctgaa ccgtggtaac agtcttgtgc gagacatgtc accaaatact gtccttccag
     4261 tgtagcctca ctaaggcctc cacttcaaga actctcgata catctctcgc acatcctgct
     4321 taccagtggc cgctgccagt ggcgttaagt cgtgtctttt cgggttggac tcaagacgat
     4381 agttaccgga taaggcgcag cggtcggact gaacgggggg ttcgtgcata cagtccagct
     4441 tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg aatgagataa acgcggccat
     4501 aacagcggaa tgacaccggt aaaccgaaag gcaggaacag gagagcgcac gagggagcca
     4561 ccagggggaa acgcctggta tctttatagt cctgtcgggt ttcgccacca ctgatttgag
     4621 cgtcagattt cgtgatgctt gtcagggggg cggagcc
//
