LOCUS       NZ_CP133283             3188 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Panama strain B82
            plasmid unnamed6, complete sequence.
ACCESSION   NZ_CP133283
VERSION     NZ_CP133283.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37118176
            Assembly: GCF_030980015.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Panama
  ORGANISM  Salmonella enterica subsp. enterica serovar Panama
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3188)
  AUTHORS   Wetchasirigul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2023) Veterinary public health, Faculty of
            Veterinary science, Henri-Dunant Road, Pathumwan, Bangkok, Bangkok
            10330, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 11-JUN-2022
            Assembly Method                   :: Unicycler v. v0.4.8
            Assembly Name                     :: Salmo_B82
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/30/2023 16:41:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,787
            CDSs (total)                      :: 4,672
            Genes (coding)                    :: 4,509
            CDSs (with protein)               :: 4,509
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 64 of 163
            Pseudo Genes (incomplete)         :: 115 of 163
            Pseudo Genes (internal stop)      :: 31 of 163
            Pseudo Genes (multiple problems)  :: 42 of 163
            Pseudo Genes (short protein)      :: 1 of 163
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP133283.1.
            Bacteria and source DNA available from CU.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3188
                     /organism="Salmonella enterica subsp. enterica serovar
                     Panama"
                     /mol_type="genomic DNA"
                     /strain="B82"
                     /serovar="Panama"
                     /isolation_source="Human stool"
                     /sub_species="enterica"
                     /db_xref="taxon:29472"
                     /plasmid="unnamed6"
                     /geo_loc_name="Thailand: Khonkaen province"
                     /lat_lon="16.439625 N 102.828728 E"
                     /collection_date="2011"
                     /collected_by="Chulalongkorn University"
     gene            complement(76..270)
                     /locus_tag="RCF37_RS23920"
                     /old_locus_tag="RCF37_23920"
     CDS             complement(76..270)
                     /locus_tag="RCF37_RS23920"
                     /old_locus_tag="RCF37_23920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_052923731.1"
                     /translation="MNKQQQTALNMARFIKSQSLALLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFEAESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1560..1808
                     /locus_tag="RCF37_RS23925"
                     /old_locus_tag="RCF37_23925"
     CDS             1560..1808
                     /locus_tag="RCF37_RS23925"
                     /old_locus_tag="RCF37_23925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017096688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_029793011.1"
                     /translation="MKNVRMQFDLPEDRLDELDSLMKKCGISTKKELFNYALTMLEWAV
                     DESESGHEIAAIDRDSKQFYALRMPILKRVNRTSTAN"
                     /name="hypothetical protein"
     gene            1882..2253
                     /locus_tag="RCF37_RS23930"
                     /old_locus_tag="RCF37_23930"
     CDS             1882..2253
                     /locus_tag="RCF37_RS23930"
                     /old_locus_tag="RCF37_23930"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_064996074.1"
                     /translation="MSDSLDGFTEGDTQKEKQKVKQPKPFFNDVEESADRRHLRWTKSG
                     VTLAMTILVAVMNWMVISMLYHVLDEELSLIRSGFMRADERTVTTSVYLALIAGTVAEV
                     SALFLIIVKSVFKNNNNDI"
                     /name="hypothetical protein"
     gene            complement(2503..2616)
                     /locus_tag="RCF37_RS23935"
                     /old_locus_tag="RCF37_23935"
     CDS             complement(2503..2616)
                     /locus_tag="RCF37_RS23935"
                     /old_locus_tag="RCF37_23935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_307725924.1"
                     /translation="MHEPPVQPDCYALSGNYRLESNPVRHDLSPQAAATGN"
                     /name="replication initiation protein"
     Typing          308..405
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.99"
                     /coverage="99.0"
                     /evalue="1.0399999999999998e-42"
     Typing          530..784
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.023"
                     /coverage="89.0"
                     /evalue="1.24e-101"
     Typing          3107..3188
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          complement(2545..3093)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.548"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 cctgacgcgc cctggcgggc ttgtctgatg ccgaaaacgc tcgcggacaa gccgtgagcg
       61 cctccgtcag cttcgttatg ttcctgtttc actttcggcc tcaaagcgaa cctggatgct
      121 gttctggagt tcttccgcga gttcgtgcag tcgttcgcac atggccgcct gttcgtcggc
      181 atccagagca tccagttttt caagcagtgc caggctctgg cttttgataa atcgcgccat
      241 attcagcgca gtttgttgct gtttgttcac cttccgttgt tctccgtcag taccgggtgt
      301 cgggtagacc ctgaccaggt ggtaattgta agacgttgcg ggcgacggta ttacaattgc
      361 acatcctgtc ctgtttcttt aggacgtatc atggcacagc atatcaactg ataaataatc
      421 cctgtgcagt gcagccgctg ttgcataaaa tttcgctctg cgtcgagtgt ttcttaatca
      481 ataattccgc tgatactccg gaaaaacgcg agtctgttct catgcctgaa atgcccacac
      541 cccacgcaaa aacaagtttt tgctgatttt tctttataaa tagagagtta tgacaaatta
      601 gtttctcttg ctctctttgc gatatttaaa aaagcggtgt cggcgcagct acaacaccgc
      661 gccgacaccg ctttgtaggg gtggtactga ctattttcat aaaaaacatc attttatatt
      721 aggggtgctg ctagcggcgc ggtgtgtttt ttacaggacg cccctggggg cgctgccagg
      781 ggtgtctgtt cagatatgta gcaatgagtc agggattcac gaactgaaaa tgtccgaaaa
      841 tgtgtctcat gggcaccgta tgcgcccaaa ccgatcgcca ttcagtttca tgcatagtca
      901 tgcaacgcgc tgaaaacgtt cctgacgcat ttttccggtt ttcgcttggt aaaacatctc
      961 tttttgcggt atctgcgtca gaatcgcgtt cagcgcgttt ctgcggtgcg cgtaatgcga
     1021 cgttatggta aatgaggttg agatttggct gattgtctca tcctgttaca actggtgttg
     1081 tatttttgac cgctatcgtt ctatactcgt tttgtgctcc tgttacactc gacaaaggag
     1141 gtgtttaggt gtaatataca atctggaacc catcacggtg ggtggtgggt aaactggaga
     1201 ttttatctgt gagcaagtta actcaaacct gctcgtcgac ctccgggaaa agtgaggact
     1261 gtaccgactt tgaagaactg cctcctaagg agctttcttt gaaggattgg ttttcagtct
     1321 ttactgaggt cgatgagtaa taaccaccat ggaggagtat tcacaacctc ctccatggtg
     1381 gggataacct gcttgcggaa aaagagataa ggttaagtct tatctaaatt aggagcatca
     1441 taaaaatatg aaacttaaat tatttataag tagatatata taaataatac aggccctaat
     1501 agtgaagaat gtgcagcata gagtgtaagg atgacatgct ggcccctcgg agattagtta
     1561 tgaaaaatgt acgtatgcaa ttcgatctgc ctgaagatag gttggacgaa ctcgattctt
     1621 taatgaagaa gtgcggcata agtactaaaa aagagttgtt caactacgcg ttaacaatgc
     1681 ttgagtgggc tgtggacgag tccgaaagtg gtcacgaaat cgcagctatc gatagagaca
     1741 gtaagcaatt ttatgctcta cgaatgccta ttcttaagcg agtgaaccgt acatctactg
     1801 caaattaact tatcacttga tgtgttaagg agaaggccag tttaagctgg ccttcttttt
     1861 tttattcaag aggatttgat tgtgtcagac agcctggatg ggtttactga gggcgatacc
     1921 caaaaagaaa aacaaaaggt aaagcagccc aaaccgttct ttaatgacgt cgaggagtct
     1981 gctgatagaa gacatcttag atggactaaa agtggtgtta ctttagctat gactattttg
     2041 gtcgcagtaa tgaactggat ggtcataagt atgttatatc atgttcttga tgaagaactt
     2101 tcgctcataa gaagtggctt tatgcgggcg gatgaaagga cggtaactac tagtgtttac
     2161 ttggctttga ttgcaggaac agtagcagag gtgtcagctt tattcttgat tattgtaaag
     2221 tcagttttta agaataataa caatgatata tagatttaac ttcggccacc tctggtgaag
     2281 ttacgcatgt atttggtcaa tctatcttga gatcactcta atcaaaatgt aatctcttga
     2341 ggttgaaacg aaaaaaccgc cttggcgggc ggttttttcg aaggttctaa gagttggcgc
     2401 tctttgaacc aaggtcactg gcttggagga gcacagtcac caaaatctgt tctttcagtt
     2461 tagccttaac aggcgcatga cttcaagaca aactcctcta aatcagttac cagtggctgc
     2521 tgcctgtggc gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa
     2581 ggcgtagcag tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac
     2641 ctacaccgaa ctgagatacc aacagcgtga gctatgagaa agcgccacgc ttcccgaagg
     2701 gagaaaggcg gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga
     2761 gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact
     2821 tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc ctatggaaaa acgccagcgg
     2881 cgcggccttt ttctgccttt ttgttcacat gttctttccg gccttatccc ctgattctgt
     2941 ggataaccgc atcaccgtct ttgcgtgagc tgataccgct cgccgcagcc gaacgaccga
     3001 gcgtagcgag tcagtgagcg aggaagcgga agagcgcctg atgcggtatg ttctccttac
     3061 gcatctgtgc ggcatttcac acccggcatg gcgtgctttt catacaatcc gcactgatgc
     3121 cgcatagtta agccagtata cactccgcta tcgctacgtg actgggtcat ggctgcgccc
     3181 cgacaccc
//
