LOCUS       NZ_CP133282             4074 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Panama strain B82
            plasmid unnamed5, complete sequence.
ACCESSION   NZ_CP133282
VERSION     NZ_CP133282.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN37118176
            Assembly: GCF_030980015.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Panama
  ORGANISM  Salmonella enterica subsp. enterica serovar Panama
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4074)
  AUTHORS   Wetchasirigul,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2023) Veterinary public health, Faculty of
            Veterinary science, Henri-Dunant Road, Pathumwan, Bangkok, Bangkok
            10330, Thailand
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 11-JUN-2022
            Assembly Method                   :: Unicycler v. v0.4.8
            Assembly Name                     :: Salmo_B82
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 1.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/30/2023 16:41:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,787
            CDSs (total)                      :: 4,672
            Genes (coding)                    :: 4,509
            CDSs (with protein)               :: 4,509
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 64 of 163
            Pseudo Genes (incomplete)         :: 115 of 163
            Pseudo Genes (internal stop)      :: 31 of 163
            Pseudo Genes (multiple problems)  :: 42 of 163
            Pseudo Genes (short protein)      :: 1 of 163
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP133282.1.
            Bacteria and source DNA available from CU.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4074
                     /organism="Salmonella enterica subsp. enterica serovar
                     Panama"
                     /mol_type="genomic DNA"
                     /strain="B82"
                     /serovar="Panama"
                     /isolation_source="Human stool"
                     /sub_species="enterica"
                     /db_xref="taxon:29472"
                     /plasmid="unnamed5"
                     /geo_loc_name="Thailand: Khonkaen province"
                     /lat_lon="16.439625 N 102.828728 E"
                     /collection_date="2011"
                     /collected_by="Chulalongkorn University"
     gene            join(2158..4074,1..249)
                     /gene="mobQ"
                     /locus_tag="RCF37_RS23905"
                     /old_locus_tag="RCF37_23905"
     CDS             join(2158..4074,1..249)
                     /gene="mobQ"
                     /locus_tag="RCF37_RS23905"
                     /old_locus_tag="RCF37_23905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_001029349.1"
                     /translation="MAIYHLSMKIISRSNGYSAVASAAYRSGSLMLDERTGLTHDYTRK
                     SGVAEAVILTPATAPAWCTNRAELWNAVEKAERRKNSQLAREIELAIPHELPQDAARET
                     VLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTTRAVGPAGFGGKVRDWNDRTHAET
                     WRASWADHANRALANAGYQKEIDHRSYERQGLEKTPGIHLGKSACAMETRGIETERGEQ
                     NRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIGLPDNATSYTLRDIIEALPKDSN
                     AAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWA
                     APEYRSEQGKIQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGESGLAALRAQL
                     LKREDELRRKELEDTERSRAERRAEQLRKNDNAVMDSGVLRAVVTGYGEAPMPGNGEMT
                     CYLLLHNRNGEYTLWGNELEKYRTRIFESVDLIRDRSGYICDRSEIGQHPPLQRIYSSA
                     TFEQLLTQVCQTWPQHTRNLRQPKTWPESFCLGEDRQPAMPSLAARKVDFTQGRLPPTL
                     MPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISALTDKG
                     LRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAVVNTPEKQPDHLFRSLGFNRT
                     WDEWRREEDARTHATERRPDRGWSQGM"
                     /name="mobQ"
     gene            complement(491..1192)
                     /locus_tag="RCF37_RS23910"
                     /old_locus_tag="RCF37_23910"
     CDS             complement(491..1192)
                     /locus_tag="RCF37_RS23910"
                     /old_locus_tag="RCF37_23910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281399.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001281396.1"
                     /translation="MSDLIAYKSNALIEASYKLTLQEQRFLLVCISRLKSGEDSPSPDE
                     QKTMTITAAEFHDAFPDMGRQHAEARLKEAIDRLWDRSVIIKNEEKREEFRWVQYRAQY
                     FKGEAKVEITFSDAIMPYLTQLKGQFTRVVVKNVSSLSSTYSIRIYELLQQFRSTGDRT
                     IAIDDFRTMLAVEDKYQQFKDLNKMIIKPAIAELNEKSDLVVTVETIKKGRTVVALHFR
                     FKEDKQIKMTI"
                     /name="replication initiation protein"
     gene            complement(1725..1979)
                     /gene="mobC"
                     /locus_tag="RCF37_RS23915"
                     /old_locus_tag="RCF37_23915"
     CDS             complement(1725..1979)
                     /gene="mobC"
                     /locus_tag="RCF37_RS23915"
                     /old_locus_tag="RCF37_23915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000091747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase accessory protein MobC"
                     /protein_id="WP_000091744.1"
                     /translation="MSRTLEQKIADAEARLQRLKAKSRSLDTAQKVIVGAALLAKVRKP
                     EEVQLRAWLLQFLKAEVTRQADVTRILPLINELEALPEQ"
                     /name="mobC"
     Typing          complement(1981..2157)
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.61e-88"
     Typing          2158..2516
                     /name="MOBQ"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.5"
                     /coverage="100.0"
                     /evalue="8.52e-174"
     Typing          complement(493..1192)
                     /name="rep_cluster_1778"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.287"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          2072..4074
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.455"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gggtatggtg ttgccgtaaa tcatgatgca gacagccaca tatcacctgc accggaactt
       61 atggagtttc atctgaaaac ccgtgaggca ccgctttttg ctgtcgtcaa cacaccagaa
      121 aaacagccgg atcatctgtt ccgctcgctg ggtttcaatc gtacctggga cgaatggcgg
      181 cgcgaggaag atgcacgaac acacgccacc gagaggagac ctgatcgcgg ttggtcacag
      241 ggaatgtgaa caatattttg ttttgtttaa catcgtgtta tgttcgtcga tgttcatcga
      301 cagggatgaa tgcaagaagc acactcacat agcgcaaaca tagttttgtt tttccgcccc
      361 caaaaattgg gggttctttt tttgctgcat cagagcgttt ttgacgcaac ttttcacttc
      421 aatagtacct tcgcattcct gacacaagaa aaacgcgaca gtgagcgttt taggtgcctt
      481 aaaatcgatt ctagatcgtc atcttgatct gtttgtcttc cttgaagcga aagtgcaggg
      541 ctacaaccgt gcgccccttt ttgatcgtct caaccgttac aaccagatcg cttttttcgt
      601 tcagttcggc gatggctggc ttgattatca tcttattcaa gtctttgaat tgttgatatt
      661 tatcttcaac ggcaagcatg gttcggaaat catcgatagc tatcgttctg tcaccggtgc
      721 tgcggaactg ctggagcagc tcgtaaatgc ggatgctgta ggtgctggag aggctggaga
      781 cgttcttcac gactacccgc gtaaactgcc ccttgagctg tgtcagatac ggcatgatgg
      841 catcggagaa ggtgatctct actttcgcct cacctttgaa atactgcgcc cggtactgca
      901 cccagcggaa ctcttctcgt ttttcctcgt tcttgatgat tactgacctg tcccagaggc
      961 gatctatcgc ttccttgagc ctagcttcag cgtgctgccg tcccatgtca ggaaaggcat
     1021 catgaaactc tgcagccgtg atggtcatgg ttttttgttc atccggcgaa ggggaatctt
     1081 ctccggattt caggcggctg atacagacca gcaggaagcg ctgttcctgc aaagtgagct
     1141 tgtagcttgc ctcgataagg gcgtttgatt tgtaagctat cagatctgac atttcgcttg
     1201 ctcgttgcta ttggtggcgt ttttttactg tacgccacct atcatattgg tggaagtttt
     1261 ttttttgcaa cccctttttt ctgtggatta cacccccaaa agctccactt atcaccccca
     1321 aaagctccac ctatcacccc caaaagctcc acctatcacc cccaaaagct ccacctatct
     1381 cgccagaaca cctttaaaat catgtggtta caagacctaa aaaggtttta aaaaaaaaga
     1441 tctaaaaata agatcttaaa aacttaacgg cgagcctgtg gataacttgg ggtgctgaaa
     1501 ataaaaatcc aataaaaaca atgtgttgca aaaaaccagg attgaagatt ccgaatacac
     1561 cccctccaac cctgtggaaa tccagtattc atgcgggttc agcgcatatc acctgtcgaa
     1621 aaaccgtgcg tatgtgctca acatggcgac tgattcactt ccgcttcctc gcccactcgc
     1681 tcgctaacgc tcggtcgctg ggctgcggcg agcggacgat acaatcactg ctctggcagc
     1741 gcctccagct cgttaatcag cggcagtatt cgcgtcacat cagcctgccg tgtcacctct
     1801 gccttcagga actggagtaa ccaggctcgc aactgcactt cctccggctt tctgaccttt
     1861 gccagcaatg ctgcacccac aatgaccttc tgcgctgtgt ccaggctccg gctcttcgcc
     1921 ttcaggcgct gtaatctcgc ctcagcatca gcaatcttct gttcgagcgt tctgctcatg
     1981 atgtaactcc atgcgcgatg aaaaatcgca ttttagcgcg tcactggtag tttaaaaact
     2041 gagctggcat aatgcacggc aaatcacgaa gtgcgcactt atacaatctc cactccgttt
     2101 cgattgtgtg cgccctgcgg ggctgaaaga aaactgcaaa aaggcattac ggcagaaatg
     2161 gcgatttatc atctcagtat gaaaatcatc tccagaagca acggctacag cgccgttgct
     2221 tctgctgcct atcgttctgg ttcactaatg cttgatgagc gtaccggact gactcacgac
     2281 tacacccgca aaagcggtgt ggctgaggct gtgattctga cccccgcgac agcccctgcc
     2341 tggtgtacga accgtgccga actctggaat gccgttgaga aggccgaacg ccggaagaac
     2401 tcacaacttg cgcgggaaat tgaactcgcc atcccccacg aactgccgca ggatgccgca
     2461 cgggaaaccg ttctcgcctt tgtcagagaa aactttgtca gtcagggcat gattgctgat
     2521 gtggcgttcc atcacatgga taaaacaaat ccccatgcgc acattatgct gaccacgagg
     2581 gctgtcggac ctgcggggtt cggcggaaag gtcagggact ggaacgaccg gacacatgcc
     2641 gagacgtggc gtgcatcatg ggctgaccat gcaaacaggg cactggcgaa cgccggttat
     2701 cagaaagaga tagaccatcg ttcatacgag cgacaggggc ttgagaaaac gccgggtatt
     2761 cacctcggaa agtctgcctg tgcgatggaa acacgcggta tcgaaacaga acgcggcgaa
     2821 cagaatcgtc tgattaacag gcttaacctg gaaatacaga tttcccgcac cgaactcagg
     2881 aacagcgggc tgacagagcc tgcccgccgt gtggctgacc ttctgaatat cgggcttcct
     2941 gacaacgcaa cttcgtacac actacgtgac atcatcgaag cgttgccgaa ggacagtaac
     3001 gcggcatgga aactcaccag taacgccatg tcgatgatgg cagatatgca ggcgacgcgc
     3061 agacgctggg aagagctgaa caccgaacga aaggaagcga tgagccatgc tgccagcctg
     3121 aaaaaatcat cgccgttttc gtccggtttt tcccgtattc ccctgatgca atgggctgca
     3181 ccggaatacc gtagtgagca gggaaaaatc cagtctctga gccagcaaat ggaaaaattg
     3241 cgacagcatt accggaaggt ggagaaacag gacattcccg cgagtcagac ggcatttgaa
     3301 aaacagtggc agcagtgggg ggaatccggc cttgcagctc tcagagccca gttgcttaaa
     3361 cgtgaagatg aattacgccg gaaggagctg gaggatacag aacgtagtcg cgcggagcga
     3421 cgagcggaac agctcaggaa aaatgacaat gccgttatgg attcaggggt gctgagagca
     3481 gtcgttacgg ggtatggcga ggctcccatg cctggtaacg gggaaatgac ttgttacctt
     3541 ctgcttcaca accggaacgg agaatacacg ctctggggga acgagctgga gaaataccgc
     3601 accaggatct ttgagagtgt tgatttaata cgtgacagga gtggttatat ctgtgaccga
     3661 agcgaaatcg gtcaacatcc accactgcaa cgtatttatt cctctgcgac ctttgagcaa
     3721 cttctgacgc aggtttgcca gacatggccg caacataccc gcaatctccg ccagccgaag
     3781 acatggccgg agtctttctg tcttggagaa gaccgccagc cagccatgcc atcactggca
     3841 gcaaggaagg tggattttac gcagggacgt ctgccaccga cgctgatgcc ggtcatgagt
     3901 tctgtcgacc gggaaacccg ccagcttcag cttttgctgg tcatgggcgt ggatgactct
     3961 ctgggcggtg ttgtccggct taatggtacg ctgtatcccg cgtttgccgt tccctcagcc
     4021 gataacagcc agctggttat cagtgcactg accgataagg ggttacggta tgca
//
