LOCUS       NZ_CP133005             2216 bp    DNA     circular CON 17-APR-2024
DEFINITION  Staphylococcus epidermidis strain SEA37 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP133005
VERSION     NZ_CP133005.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36827138
            Assembly: GCF_038116975.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus epidermidis
  ORGANISM  Staphylococcus epidermidis
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Puls,J.S., Winnerling,B., Power,J.J., Kruger,A.M., Brajtenbach,D.,
            Johnson,M., Bilici,K., Camus,L., Fliesswasser,T., Schneider,T.,
            Sahl,H.G., Ghosal,D., Kubitscheck,U., Heilbronner,S. and Grein,F.
  TITLE     Staphylococcus epidermidis bacteriocin A37 kills natural competitors
            with a unique mechanism of action
  JOURNAL   ISME J 18 (1) (2024)
   PUBMED   38470311
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Power,J.J. and Heilbronner,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-AUG-2023) Microbiology,
            Ludwig-Maximilians-Universitaet Muenchen, Grosshaderner Str. 2-4,
            Martinsried, Bavaria 82152, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: MAR-2022
            Assembly Method                   :: nf-core:bacass v. v2.0.0
            Assembly Name                     :: SEA37
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 30x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore PromethION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038116975.1-RS_2024_04_16
            Annotation Date                   :: 04/16/2024 23:46:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,442
            CDSs (total)                      :: 2,358
            Genes (coding)                    :: 2,298
            CDSs (with protein)               :: 2,298
            Genes (RNA)                       :: 84
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 61
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 60
            CDSs (without protein)            :: 60
            Pseudo Genes (ambiguous residues) :: 0 of 60
            Pseudo Genes (frameshifted)       :: 37 of 60
            Pseudo Genes (incomplete)         :: 39 of 60
            Pseudo Genes (internal stop)      :: 20 of 60
            Pseudo Genes (multiple problems)  :: 27 of 60
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP133005.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Staphylococcus epidermidis"
                     /mol_type="genomic DNA"
                     /strain="SEA37"
                     /isolation_source="Nasal cavity"
                     /host="Homo sapiens"
                     /db_xref="taxon:1282"
                     /plasmid="unnamed6"
                     /geo_loc_name="Germany: Bonn"
                     /collection_date="2013"
     gene            complement(join(2081..2216,1..680))
                     /locus_tag="SHJJP9001_RS12205"
                     /old_locus_tag="SHJJP9001_002435"
     CDS             complement(join(2081..2216,1..680))
                     /locus_tag="SHJJP9001_RS12205"
                     /old_locus_tag="SHJJP9001_002435"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_341591563.1"
                     /translation="MSFVADKTLEKQKLHKSNLCKNRFCPVCAWRKARKDALGLSLMMQ
                     YIKQKEDKQFIFLTLTTPNVTAEHLESEIKAYNHSFQKMFKRKKVISATKGYVRKLEIT
                     YNKERDDYNPHFHVLIAVNKSYFTDKRYYISQKEWLELWRDVTGISEITQVQVQKIRQN
                     NNKELYEMAKYSGKDSDYLINQKVFDAFYKSLKGKQVLVYSGLFKDAKKKLKNGDLDYL
                     KEIDPTEYVYQIFYMWNKNEYLASEIFDLTDEEKQKINHQMINEIEEEK"
                     /name="protein rep"
     gene            complement(1189..1386)
                     /locus_tag="SHJJP9001_RS12210"
                     /old_locus_tag="SHJJP9001_002436"
     CDS             complement(1189..1386)
                     /locus_tag="SHJJP9001_RS12210"
                     /old_locus_tag="SHJJP9001_002436"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_162170477.1"
                     /translation="MKKSTILSIPHAFMPRKFLVGMSYVLANYVSELVGGLLGLIPTKY
                     QLNNTLCSVGSNQKAIGIKH"
                     /name="hypothetical protein"
     Typing          complement(2..788)
                     /name="rep_cluster_1281"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.468"
                     /coverage="85.0"
                     /evalue="0.0"
ORIGIN
        1 ggatcaattt cttttaagta atctaaatct ccatttttta atttcttttt agcatcttta
       61 aataatcctg aataaactaa tacctgttta cctttaagag atttatagaa tgcatcaaat
      121 actttttgat ttattaaata atcactatct ttaccagaat acttagccat ttcatataac
      181 tctttattgt tattttgtct tattttttga acttgaactt gtgtaatttc tgaaattccc
      241 gttacgtcac gccataattc aagccattct ttttggctaa tataatatct tttatctgta
      301 aaatatgact tatttactgc aattaaaaca tgaaaatgcg ggttatagtc atcacgttct
      361 ttattgtaag taatttctaa ttttcttaca taacctttcg tagcagaaat tactttttta
      421 cgcttaaaca tcttttgaaa agagtgatta taagctttaa tttcactttc taaatgctca
      481 gctgtaacat ttggcgtggt aagtgttaaa aagatgaatt gtttatcttc tttttgctta
      541 atatattgca tcatcaatga taaacctaac gcatcttttc tcgcttttcg ccatgcacat
      601 acaggacaaa atcgattttt acataaatta gatttatgca atttctgttt ctctaatgtt
      661 ttatctgcca caaaactcaa gaatgtattg cactccctta tcaaatccat ttgtccttct
      721 ttgacatgcc gttcaataaa tttctgaaat acttgatttc tccgtttttt ctcagtatac
      781 ttttccatat attaaatcac tgtaaaaaca actaagttgt atacaaagtt tttataacaa
      841 aaaagttgct ttttctcctt tcatgtaaag ttttggtttg gtcaccataa actctactat
      901 actaggtatg aaaaagcaac tttttttgcg ttcaaagaca gtcatatcaa ctaatctaga
      961 gataggtaac catacgggaa tagttaccta tagtatcaag acaagaagaa actcgtttca
     1021 ctcgtttcaa aaaagccaaa aaatctcatc gttaaatact tttaaatgca ctattaataa
     1081 ataaatgata aagtgaaaat gtaacatcat ccccacatat cattaaatct tttaatatga
     1141 aaaagttctt ttaccctcca tagccactta attgttgagt ggctattttt aatgctttat
     1201 tccaattgct ttttggttgg aaccaacgga gcataatgtg ttgttgagtt ggtacttcgt
     1261 tgggattaat cccaacaaac caccaaccaa ctcgctaaca tagttagcta acacatagct
     1321 cattccaacc aaaaattttc tcggcataaa tgcatgtggt atgcttaata tagtgctctt
     1381 tttcaatcgc acagcatttt atagcaattc tccagaccac tcatttttga gtggttcttt
     1441 tattttgcat tttaagccct ttctacgaca tttaatcatt tcgaatataa aaacaaacaa
     1501 aaatttcttt cgttcaaaag agaggctatg aatcatttta aaattcattt ctcaacactt
     1561 tcagaaagaa aaatatattt ttaatctcaa ttattcttct tagaaaaaag ctaaaacccg
     1621 attaataata ttcaaaaaag gcagcagtgc attttgattt tggctaccat ttggctccct
     1681 tttagctccc aaatggctac ctaataatgt agctatttgg tatccatttt taattttagg
     1741 tatccatatg gtatccattt ttgattttgt gtagctattc ggtagctttt gtgtagccgt
     1801 tcgggagtca tataacaatt tttatcgcat aaataggaat cccatttgac actgtcaaat
     1861 caatattttg cacagaaatg gctaccgaat ggctacataa ggagacattt ctgtgtagga
     1921 ttcctcttat gctcttttaa tagcaatagt tgcaatatta cacctgtata ccctcatatt
     1981 tttcatttca aaatctcaaa cctttttcag aaaaacatct ttaatttttt ctaacaaaac
     2041 aaaaaacgct cactcttttt ttcgagtagc gttttgtttt ttatttttct tcttcaattt
     2101 catttatcat ttgatgattt attttttgtt tttcttcgtc tgttaaatca aaaatttcac
     2161 tcgctaaata ttcattttta ttccacatgt aaaaaatttg atacacgtat tcggtt
//
