LOCUS       NZ_CP132602             2683 bp    DNA     circular CON 24-APR-2024
DEFINITION  Morganella morganii strain 23 plasmid pB, complete sequence.
ACCESSION   NZ_CP132602
VERSION     NZ_CP132602.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36779405
            Assembly: GCF_038406735.1
KEYWORDS    RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 2683)
  AUTHORS   Wang,K.-J. and Meng,X.
  TITLE     Isolation and characterization of emerging piscine Morganella
            morganii and novel virulence-associated factors impact the
            colonization and pathogenicity in mice
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2683)
  AUTHORS   Wang,K.-J. and Meng,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2023) Biotechnology, Xiamen university, 4221 Xiang
            An South Road, Xiamen, Fujian 361100, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 12-JAN-2021
            Assembly Method                   :: FALCON v. January-2021
            Assembly Name                     :: M. mor_23
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 3946673.0x
            Sequencing Technology             :: PacBio RSII
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038406735.1-RS_2024_04_23
            Annotation Date                   :: 04/23/2024 13:18:10
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,776
            CDSs (total)                      :: 3,669
            Genes (coding)                    :: 3,606
            CDSs (with protein)               :: 3,606
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 16 of 63
            Pseudo Genes (incomplete)         :: 53 of 63
            Pseudo Genes (internal stop)      :: 13 of 63
            Pseudo Genes (multiple problems)  :: 16 of 63
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP132602.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2683
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="23"
                     /isolation_source="Larimichthys crocea"
                     /db_xref="taxon:582"
                     /plasmid="pB"
                     /geo_loc_name="China: Ningde city, Fujian province"
                     /lat_lon="26.39 N 119.31 E"
                     /collection_date="2021-08"
                     /collected_by="Ke-Jian Wang and Xiangyu Meng"
     gene            complement(829..1269)
                     /locus_tag="Q7W72_RS18875"
                     /old_locus_tag="Q7W72_18875"
     CDS             complement(829..1269)
                     /locus_tag="Q7W72_RS18875"
                     /old_locus_tag="Q7W72_18875"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_015063446.1"
                     /translation="MSQLFRLASPEDYEYIEELNLWELSFDKRPVQGVRCEDPVIGAEK
                     YNQGREKFKALASRHKKHWKPNGLTFSELIRWAIECGTPEQCQLVLALYHCTNDDDYQA
                     MGIQLSRSIDNANVSPIIFFTGKNQRLLGDISMLKQLEEKVR"
                     /name="hypothetical protein"
     gene            complement(1907..2551)
                     /locus_tag="Q7W72_RS18880"
                     /old_locus_tag="Q7W72_18880"
     CDS             complement(1907..2551)
                     /locus_tag="Q7W72_RS18880"
                     /old_locus_tag="Q7W72_18880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032495680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrD1"
                     /protein_id="WP_012634451.1"
                     /translation="MEKHFINEKFSRDQFTGNRVKNIAFSNCDFSGVDLTDTEFVDCSF
                     YDRNSLEGCDFNRAKLKNASFKSCDLSMSNFKNISALGLEISECLAQGADFRGANFMNM
                     ITTRSWFCSAYITKTNLSYANFSRVILEKCELWENRWNGTVITGAVFRGSDLSCGEFSS
                     FDWSLADFTGCDLTGGALGELDARRINLDGVKLDGEQALQLVESLGVIVHR"
                     /name="quinolone resistance pentapeptide repeat protein
                     QnrD1"
     ARG             complement(1911..2551)
                     /name="qnrD1"
                     /gene="qnrD1"
                     /gene_name="quinolone resistance pentapeptide repeat
                     protein QnrD1"
                     /tool="amrfinderplus"
                     /drug_class="QUINOLONE"
                     /identity="100.0"
                     /coverage="100.0"
     Typing          complement(2..118)
                     /name="Col3M"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.305"
                     /coverage="100.0"
                     /evalue="2.36e-51"
ORIGIN
        1 ttcatcccca ttaaagcccc tcgaaacgat tttaagacac gatcacccta taaaacaccc
       61 aaatctacgc tgaaagttta gaacggtttt gcgggcttct gagtgcgttt ttaacatcgt
      121 gcaaactgac aagtaaaacg atgcgaaatc gctgaaagtc acaaacttgt tttgtggcaa
      181 gaagcgattt gaccaaccga gtaaaacgag ggcggtaggc tttttgtttt tatcctgatg
      241 agcgtccagc gaagaaaggg aaaaacaggg ggagccgaaa cgaaatgaca cgccccagcg
      301 atggcaagtg aaccccagtg aacgtgtttc gttttggggg caaagccccc cgtcaagcga
      361 agcgtctgac caccacattt ttgagcgacc aaatacaggg gcgaaaaaag ggggtggtca
      421 gacgaacgca gtgagtttga cgggcttggg tgaatggttt ttttcgcagg cgtccagccg
      481 aagaaaatag ccagagggcg gagccttatg tcattcattt tcgtccagaa aatgagtggc
      541 attgatactg aaagtatcat ggggtgcaag ttagtaaaac tatgattcta cccattattt
      601 cacccgttat tctgcccgtt atacctaaat tgggtgcaat aacgggtaaa gtaataggta
      661 gaataacagg tggattaatg ggtaagaaat aacacaacgt catcttgtgt ctatctatta
      721 ttctgtatct tattctatgt attattctac ctattacaga cgaaatagat aaaataagag
      781 atagaataat agataggata atacataaaa taataggtaa acctaacgtc agcgcacctt
      841 ttcttcgagc tgttttagca tcgaaatatc acctaataac cgttgatttt tacctgtgaa
      901 aaagatgatc ggactgacat ttgcattatc aatacttcgg cttaactgaa ttcccatcgc
      961 ctgataatca tcatcgtttg tgcaatggta taacgctaaa acaagctgac attgttctgg
     1021 agttccgcat tctattgccc agcggatcaa ctccgaaaag gtcaatccgt tcggtttcca
     1081 gtgtttttta tgccgtgacg ctaacgcctt aaatttttca cgcccttgat tatatttttc
     1141 tgccccgatc accggatctt cacaacgaac cccttgaacc ggtcgcttat caaatgacaa
     1201 ttcccataaa tttaattctt cgatgtattc gtaatcttct ggcgatgcca aacgaaataa
     1261 ttgagacata gagacaccct ccgatcatgt gtgaacggag acagtataag gctttcgaga
     1321 aattccgctt cctcgacgtg aaacaagttc acgccttgcg gcgagcgttg cgaattgaat
     1381 ttatgaggtt taccaagctc cagatgtaac aaagccccgt gacagcatca cagggctctg
     1441 gtactctaaa tcttgtgcat tcgttgctca gattagacgt cgcaatccaa tcttagcaac
     1501 gtgagaggcg cttgtcacgt tctcattaaa taccagccaa cgacattaac ccaaatgcac
     1561 cacttgattg actcggactt agcccggtct ccgaaaggat aaacaggcaa attgtggtag
     1621 taaaacgtac cggaaaacga aattccggct ctacctccga atcacgctgc ggtatcgaaa
     1681 gattacagtg cgtacctgat aagagcacca atcaacggac tagggatttc ttggattgcg
     1741 aagtgtcgaa agaagcccaa cctaaccaaa cttagccaga ttaacgagct aagagaccat
     1801 gacccaataa ctgatcatgg agaaaagcaa agacaagatg aagatgtcgc ttcgctccgt
     1861 tttgattagt accacattgg ggcattaggc gttttttacc tagattttat cggtgaacaa
     1921 taacacctaa actctcaaca agctgaagcg cctgctctcc atccaacttc actccatcta
     1981 aattaattcg ccttgcatca agctcgccaa gcgccccacc cgttaaatca caaccagtaa
     2041 aatcagccaa agaccaatca aacgatgaaa actccccaca agaaagatcg gagccacgaa
     2101 acacggcgcc agttatcaca gtgccattcc agcgattttc ccacagttcg cacttttcta
     2161 atatgactct agaaaaatta gcgtaactaa gatttgtctt ggttatataa gcactacaaa
     2221 accatgacct tgtagttatc atattcataa aattagcccc tcgaaaatca gctccttgag
     2281 ctaaacactc actaatttca agacctaagg cgctaatgtt tttaaaatta ctcattgata
     2341 aatcgcagct tttaaagcta gcgtttttta gtttggctct attaaaatca cacccttcca
     2401 agctattcct gtcgtaaaaa ctacaatcaa caaattcagt atcagttaaa tcaacccctg
     2461 aaaaatcaca atttgaaaag gcaatatttt taactctatt ccccgtaaat tgatctcgtg
     2521 aaaacttttc attgataaag tgcttttcca tacatgctac acctggttat ttatacagtg
     2581 caatcattgt acattaattt gaacaacctt aaactctagc taaaattgat tcatacaatc
     2641 ccttttatgt taaacgggcg agttagttag caaaaacctc ccg
//
