LOCUS       NZ_CP131953             2024 bp    DNA     circular CON 12-AUG-2023
DEFINITION  Acinetobacter baumannii strain 2023CK-00127 plasmid unnamed3,
            complete sequence.
ACCESSION   NZ_CP131953
VERSION     NZ_CP131953.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33288250
            Assembly: GCF_028634015.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Pathogen: clinical or host-associated sample
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Hergert,J., Casey,R., Wagner,J., Young,E.L. and Oakeson,K.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-AUG-2023) Utah Public Health Laboratory, Utah Public
            Health Laboratory Infectious Disease Submission Group, 4431 S 2700
            W, Salt Lake City, UT 84129, USA
REFERENCE   3  (bases 1 to 2024)
  CONSRTM   Clinical and Environmental Microbiology Branch: Whole genome
            sequencing antimicrobial resistance pathogens in the healthcare
            setting
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-2023) Division of Healthcare Quality Promotion, US
            Centers for Disease Control and Prevention, 1600 Clifton Rd,
            Atlanta, GA, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 55.0x
            Sequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 08/10/2023 07:59:08
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,958
            CDSs (total)                      :: 3,864
            Genes (coding)                    :: 3,746
            CDSs (with protein)               :: 3,746
            Genes (RNA)                       :: 94
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 26 of 118
            Pseudo Genes (incomplete)         :: 87 of 118
            Pseudo Genes (internal stop)      :: 11 of 118
            Pseudo Genes (multiple problems)  :: 6 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP131953.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="2023CK-00127"
                     /isolation_source="Wound/Abscess"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed3"
                     /geo_loc_name="USA"
                     /collection_date="2023-01-18"
     gene            complement(join(1773..2024,1..753))
                     /locus_tag="Q8W10_RS19780"
                     /old_locus_tag="Q8W10_19795"
     CDS             complement(join(1773..2024,1..753))
                     /locus_tag="Q8W10_RS19780"
                     /old_locus_tag="Q8W10_19795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568086.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage/plasmid replication protein, II/X family"
                     /protein_id="WP_000568086.1"
                     /translation="MIDWASAILPCKHDPSKLISGVVMSFDPLGNNEWIVNKTLSVEGS
                     YSSKIQIKSHTDNQIYISGNPTKFLQGHNLFGSNDLVSIMDSCFEKLLTYDNLGLCPDP
                     FQRAAIKDGYYELTRVDVNETWHLKNKNEVLAWIRAVGETAILKHRGAGQFSGDTAYFG
                     KNSRRWSLKCYSKGLEILAKGHKLPQELCIPEMIEYANKALRIEGVIRQLELKRRHLNV
                     AANWDIDTAEVLLLEYISKLEMSDVYMLKDDVLDSLPHRLRLTYQSWLNGDDLKQILPH
                     NTFYRYKKALREYGIDISTKSPKEKNNVIPLIRVLEAKPVGIPDWAYEKGLVA"
                     /name="phage/plasmid replication protein, II/X family"
     gene            complement(750..1028)
                     /locus_tag="Q8W10_RS19785"
                     /old_locus_tag="Q8W10_19800"
     CDS             complement(750..1028)
                     /locus_tag="Q8W10_RS19785"
                     /old_locus_tag="Q8W10_19800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001143137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001143137.1"
                     /translation="MPTQKPRIALTVPDEINQTLDRLYELTGTPKSKLIVEMLEQYVPI
                     LEQVVDTLEKIKSDKENGKEIAKKFAQDMLFDGQEMLGIMAKEARDL"
                     /name="hypothetical protein"
     gene            complement(1481..1705)
                     /locus_tag="Q8W10_RS19790"
                     /old_locus_tag="Q8W10_19805"
     CDS             complement(1481..1705)
                     /locus_tag="Q8W10_RS19790"
                     /old_locus_tag="Q8W10_19805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000752628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000752628.1"
                     /translation="MADANTTAFEFLGKTVSFEYVRHIQITEQSSIDFREKVSGVITNI
                     VLSLNSEPEISINDGDFYSLSDLINFTVS"
                     /name="hypothetical protein"
ORIGIN
        1 tttgagcata tagacatcac tcatttctaa tttagatata tattctagga gtaacacctc
       61 tgctgtgtct atatcccaat tagcagctac atttaaatga cgtcttttaa gctctaattg
      121 tcttataaca ccctctattc tcaaggcttt gtttgcatat tcaatcattt caggaataca
      181 taattcctgt ggtaatttat gaccttttgc caaaatttct aaacctttgg agtaacactt
      241 tagagaccat cggcgagaat ttttaccaaa ataagcagta tcaccagaga attgaccagc
      301 cccacgatgt ttaagaattg ctgtttcacc tacagcccga atccaggcta gaacctcatt
      361 tttatttttc agatgccaag tttcatttac atccacccta gtcagttcat agtaaccatc
      421 tttaatagca gctctttgaa atgggtcggg gcataaacct aaattatcgt atgtcaaaag
      481 cttttcaaaa caagaatcca ttattgaaac taggtcatta gaaccgaata ggttatgacc
      541 ttgtaaaaat ttagttgggt tgcccgaaat gtaaatctga ttatcagtat gagatttaat
      601 ttgaatcttt gaagaataag aaccctcaac actcaatgtt ttattaacaa tccattcatt
      661 gttacccaat gggtcaaatg acataacaac gcccgatatg agcttactag ggtcgtgttt
      721 acaagggagt attgcagatg cccaatcaat cataaatcgc gagcctcttt agccataatg
      781 cctaacattt cctgaccatc aaaaagcata tcttgagcaa attttttagc tatttcctta
      841 ccgttttcct tgtcagattt gattttttcc aaggtgtcga ctacttgctc aagaatagga
      901 acatattgct ccaacatctc tacgataagc ttcgatttag gcgtaccagt gagttcgtac
      961 aaacgatcta aagtttgatt aatttcatca ggaacagtta aggcgattct aggtttttga
     1021 gtaggcatat tgttttaggt gtaactattt tggattaatg tagcactcta aaataacaaa
     1081 gtaaatagaa taattcccga aagtggtaca aatgtgcagg ggggaaatgt agtgtttatc
     1141 tagtattgtc tcgtatcaga ataccactat ggtacaaatg tgcagtatta ctaacactgc
     1201 acaccccctc ggcgacaagt ctgcctgagc gggtgttggt gggtggatat gcgagcatag
     1261 ctcggttctt actgttctta ggcaaaaggg agctgtaatc agagagggaa gtttcaagat
     1321 ttttatggaa tcagttcact cgtagacact cgctctggaa ctaaaggtta tatcagtaat
     1381 atttagtagc gcaggatagg caaatgtatt gcaaatggta gttttgtcat acaaaaaaag
     1441 cgccacatgg acgcttttgg ggtggaatct agtcctatat ttaggaaact gtgaaattaa
     1501 ttaaatcaga tagggagtaa aaatccccat catttataga aatttcaggt tcagaattga
     1561 gactgagaac aatattagtg atgactccag aaaccttttc tctaaaatca atcgaagatt
     1621 gttcagttat ttgaatgtgg cggacatatt caaatgaaac agtcttgcct aaaaattcga
     1681 aagcagtagt attggcatca gccatgatga tctcctcgaa agatcgatgt ggttagctgt
     1741 atagggggat tgccgtccct ctatgcagcg gtttaagcga ctagaccctt ttcataagcc
     1801 cagtcaggaa tacctacagg ttttgcttct aaaacccgaa ttaatggaat tacattattt
     1861 ttctctttag gtgactttgt agaaatatct atcccatatt cacgaagagc ctttttataa
     1921 cgataaaaag tgttatgggg taaaatctgc ttcagatcat caccatttag ccatgattga
     1981 tatgtaaggc gtaggcgatg aggcaaagag tcaagaacat catc
//
