LOCUS       NZ_CP131872             3866 bp    DNA     circular CON 25-APR-2024
DEFINITION  Acinetobacter pittii strain 2012N08-034 plasmid p2012N08-034-4,
            complete sequence.
ACCESSION   NZ_CP131872
VERSION     NZ_CP131872.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36766195
            Assembly: GCF_038441165.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter pittii
  ORGANISM  Acinetobacter pittii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 3866)
  AUTHORS   Chen,F.-J., Liao,Y.-C. and Chiu,Y.-T.
  TITLE     Rapid Diagnostics and Real-time Genomic Surveillance System for
            Pathogens from Culture
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3866)
  AUTHORS   Chen,F.-J., Liao,Y.-C. and Chiu,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JUL-2023) National Institute of Infectious Diseases
            and Vaccinology, National Health Research Institutes, No. 35, Keyan
            Road, Zhunan Town, Miaoli County 350, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 10-APR-2018
            Assembly Method                   :: CCBGpipe v. 1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80x
            Sequencing Technology :: Oxford Nanopore MinION and Illumina iSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038441165.1-RS_2024_04_24
            Annotation Date                   :: 04/24/2024 15:14:30
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,726
            CDSs (total)                      :: 3,631
            Genes (coding)                    :: 3,590
            CDSs (with protein)               :: 3,590
            Genes (RNA)                       :: 95
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 22 of 41
            Pseudo Genes (incomplete)         :: 17 of 41
            Pseudo Genes (internal stop)      :: 10 of 41
            Pseudo Genes (multiple problems)  :: 7 of 41
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP131872.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3866
                     /organism="Acinetobacter pittii"
                     /mol_type="genomic DNA"
                     /strain="2012N08-034"
                     /isolation_source="respiratory"
                     /host="Homo sapiens"
                     /db_xref="taxon:48296"
                     /plasmid="p2012N08-034-4"
                     /geo_loc_name="Taiwan"
                     /collection_date="2012"
                     /collected_by="NHRI"
     gene            join(3152..3866,1..602)
                     /locus_tag="Q7574_RS18620"
                     /old_locus_tag="Q7574_18685"
     CDS             join(3152..3866,1..602)
                     /locus_tag="Q7574_RS18620"
                     /old_locus_tag="Q7574_18685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016543294.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_342064002.1"
                     /translation="MRNNLNDQNLPSSTNSALASFGGVPASKKSRLGTIVKLCSNVDSK
                     EKNLALEKAREYRKRNIKLKDRAGEILYIPNQKKQAPVCSCGKCRIDGSAPVGVDYNQK
                     TGMASYTNLQYCGSVWVCPDCSYKISQERKKELAEAMKGCVDKGLHVAMLTLTVPHYLG
                     DDLRALLKKMSKAKHSLWSNRNSREYIADQFPMIGHITATEVKYSDSNGFHPHYHILCF
                     LDKQYQKEDLEIIENELYEFWAEKCVKAGLGKPNRRNGIDLKMGSNNADTLADYIAKWG
                     IAEEMTQAHLKIGKNNLQSLTMWEVLELAQMEASTTDKYSHIFKTYAVAFKGRKQLHWS
                     KGLKKLLECPVKDDEEIANTNTEEDPTEVVNALFLSPQDFWAICYHKKRAEFLELVESD
                     FAKNGIQTDLKSVRDFLIGLKNPSDFLRGRGEKSPPLME"
                     /name="protein rep"
     gene            706..2400
                     /gene="mobV"
                     /locus_tag="Q7574_RS18625"
                     /old_locus_tag="Q7574_18690"
     CDS             706..2400
                     /gene="mobV"
                     /locus_tag="Q7574_RS18625"
                     /old_locus_tag="Q7574_18690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016653420.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_342064003.1"
                     /translation="MSYAILRTEKLKTMGNIAASLSHNYRNRPTPNADPYRTVNNEHDL
                     KTAGQVMDGIKNRLPEKTRSNAVLCVEYLITMSPDWSGLGTEKEADFFKRSLEWLKQRH
                     GAENVISTSIHRDETTPHLVAYVVPIDSQGKLNAREFLGGRAKLSKMQTDFHDQVKDLG
                     LERGLEGSKAEHTTIKDFYAEIQKPDNEKYLIQKPPLKTITYNDSAIHMLDGKPLKDEK
                     LQKYFGSLFDEQHEYYQKQSLKAQEALSVKLSEQIIKTEKEAEAHRNAVKQIKKLEKKI
                     DKMLDEFSQIIEFKELFPNDYKEIEQSLKDRIQDHKNQLIRKREEDARFEAQLRAHREQ
                     LAKEQERQQAIEFRKTLESDRKMQIEADRAHLRSKVGECTTKPEKLAYNAIQSKLEGVI
                     GEGANYPALLDNNEPTTNPYAEILRLMDDREAYDFKKKLEIILNQCADSKNKGYDDTYN
                     GWGTKPSYYDSFDTSAKYIVAIQSIIDDQVQEGGSWSYEKASEVKSALSDVLVGKCKNE
                     YDVLLIDEKSKERQSQYNESVELSNKKQLDNGVYFEQEKKRGNDFEM"
                     /name="mobV"
     gene            2509..2763
                     /locus_tag="Q7574_RS18630"
                     /old_locus_tag="Q7574_18695"
     CDS             2509..2763
                     /locus_tag="Q7574_RS18630"
                     /old_locus_tag="Q7574_18695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016543293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_151283645.1"
                     /translation="MQLDSLKRKILEIANAQYPRVALIEIENDKIVSLSEYEIEEVIKA
                     LKELQDNNFIVNAIRVGTDQMVSFGHLEITPKGQNLLND"
                     /name="hypothetical protein"
ORIGIN
        1 tttatgagtt ctgggctgag aagtgtgtca aagctggact tggtaagcct aatcgtagga
       61 atggtataga tttaaaaatg ggttctaaca atgctgatac ccttgctgat tatattgcta
      121 agtggggaat tgcagaggaa atgactcaag cacatttgaa gattggtaaa aataatttgc
      181 agtctttaac gatgtgggaa gtccttgagc ttgcccaaat ggaagcaagt acaacagata
      241 aatattcaca catatttaaa acctatgccg ttgctttcaa aggaagaaag caacttcatt
      301 ggtcaaaggg tttaaagaaa ttattagaat gtccggttaa ggatgacgag gaaattgcaa
      361 atacaaatac tgaagaagat ccgactgaag ttgttaatgc tctttttctt agtcctcaag
      421 atttttgggc aatctgttat cacaaaaaac gtgctgagtt tcttgaactc gttgaatccg
      481 attttgctaa aaatgggatt cagaccgatc taaaatccgt aagggatttt ttgattggtc
      541 ttaaaaatcc gtcggatttt ttgaggggtc gaggggagaa atctcccccg ctcatggaat
      601 aatttgaaaa cgcagtttta aaattgtgta gtgagtacac attccgcttc gctaatgttt
      661 ttccctgtgg cacactgggg gaaaactagc gataggatgt gttttatgag ttatgcaatt
      721 ctcagaacag aaaaactgaa aacgatgggc aatattgctg catctttgag ccataactat
      781 cgcaatagac ctactcctaa tgctgaccca taccgcactg ttaataatga acatgattta
      841 aaaacagcag gacaggtgat ggatgggatt aaaaatcgac ttcctgaaaa aacacgttca
      901 aacgctgtcc tatgtgttga atatttaata acgatgtctc cagattggtc gggattgggg
      961 acagaaaaag aagcggattt ttttaaacgg tcactggaat ggttaaaaca aaggcatggc
     1021 gctgaaaatg ttattagtac ctcgatccac cgtgatgaaa ctaccccgca ccttgtcgca
     1081 tacgttgttc ctattgattc acagggaaaa ttgaatgcta gggaattctt aggcggtagg
     1141 gcaaaactat caaaaatgca gactgatttt catgatcaag tgaaagattt agggcttgaa
     1201 agagggctgg aggggtcgaa ggcagaacat acgacaatta aagattttta tgctgaaatt
     1261 caaaagcctg ataatgaaaa atatttaatc caaaaaccac cattaaaaac aattacttat
     1321 aatgattctg caattcatat gttggatgga aaacctttaa aagatgagaa gttgcagaag
     1381 tattttggaa gtctttttga tgagcagcat gaatactatc aaaagcagtc tttaaaagcc
     1441 caagaagccc tatctgtaaa gctttcagag caaattatta agacagagaa agaagcagaa
     1501 gcccatagaa atgcagtaaa acagataaaa aaattagaaa aaaagattga taaaatgctt
     1561 gatgaattct ctcaaattat tgagtttaaa gaacttttcc caaatgatta caaggaaata
     1621 gaacagagtt taaaagatcg aatacaagat cataaaaatc aattgattag aaaaagggaa
     1681 gaggatgcac gatttgaagc gcaattaagg gcgcaccgtg aacagttagc aaaagagcaa
     1741 gagagacaac aggcaataga atttaggaag acactagaaa gtgatcgtaa aatgcaaata
     1801 gaggctgata gagcgcattt acggtctaaa gtgggtgaat gtactactaa acccgaaaaa
     1861 ctggcttata acgcaataca gagcaaatta gagggtgtta ttggagaggg agctaactat
     1921 cctgctttgc ttgataataa tgagcctaca actaacccat atgctgagat acttaggcta
     1981 atggatgata gagaagcata tgattttaaa aagaaattag aaattatatt aaaccaatgt
     2041 gcagattcta agaataaggg ctatgacgat acctataacg gatggggaac aaaaccaagt
     2101 tactatgata gttttgatac atctgcaaaa tatattgttg caattcaaag tattatagat
     2161 gatcaggtac aagagggcgg ttcatggtct tatgaaaaag cgagtgaggt aaaaagcgct
     2221 ttaagtgatg tgttggttgg taagtgtaaa aatgaatatg acgtactttt gattgatgag
     2281 aaatcgaaag aaaggcagag tcaatacaat gaatctgttg aattatctaa taaaaaacaa
     2341 ttggataatg gtgtgtattt tgagcaagaa aagaaaagag gaaatgactt tgagatgtga
     2401 gttttaatta aaagtaagtc ttaaatgctt cattttgtcg ctgccccact acatgctcgc
     2461 ttggaggtat aataagactt ctataagtta ttaatttagt tggtaagtat gcagttagac
     2521 agtttaaaac gtaaaattct tgagattgct aatgctcaat atcctagagt tgctttaata
     2581 gagattgaga atgataaaat tgttagtcta tctgaatatg aaattgagga agttataaaa
     2641 gccttaaaag agcttcaaga taataatttt attgtgaatg ctataagagt tggtactgat
     2701 caaatggtat cttttgggca tttagaaata actccaaaag gtcaaaatct tttaaatgat
     2761 taatagaaaa tttagatgaa cgagtgtcta cgagtggcac aaacttaatc tgattcaaga
     2821 tgttttttct ctgattacaa gctccctttt gatctcaaac gggagtaaca gagcatccca
     2881 aagggtgcga acactgaaaa atcaatagct tagaaatcaa ttagagtaac tatttagtgt
     2941 aatttttact ttaaaatcaa ggttttgcaa aggctgtatt tttaagatat attactttta
     3001 gttttactac agaccaaaaa aaagcccaga ttcttggcgg aacaggcttt tgattggcta
     3061 ctttcaacgg cttgaggtgt tgatttcaca atgtatacgg acagtataaa ggtgatttcc
     3121 ctctccatca agcctgatta taggcttgag catgcgaaac aatcttaacg atcaaaacct
     3181 accttcctct actaacagcg ctctagcgtc atttggtggc gttcctgcat ccaaaaaaag
     3241 tcgccttggg acaattgtca aattatgttc caacgttgat tctaaagaga aaaatttagc
     3301 tcttgaaaag gctcgtgaat atagaaaacg aaacattaag ctaaaagata gagcagggga
     3361 gattctctat atcccaaacc aaaagaaaca ggctccagta tgtagctgtg ggaaatgtcg
     3421 tattgatggc agcgcccctg taggtgtgga ttacaaccaa aaaacaggaa tggctagtta
     3481 tacaaatttg cagtattgcg gttctgtttg ggtgtgccca gactgtagtt ataaaattag
     3541 ccaggaacga aaaaaagaat tagccgaagc gatgaaaggc tgtgttgaca agggtttgca
     3601 tgtggcaatg cttacattga ctgtgcctca ctatcttggt gatgatctcc gagcattgct
     3661 taaaaaaatg agtaaggcga agcattcttt atggtcgaat agaaatagcc gtgaatacat
     3721 tgcagaccaa tttccaatga ttgggcatat cacagctaca gaagtgaaat atagtgatag
     3781 caatggtttc cacccccact accatatcct gtgcttttta gataagcagt atcaaaaaga
     3841 agatttagag attatcgaaa atgaac
//
