LOCUS       NZ_CP131658             1491 bp    DNA     circular CON 24-APR-2024
DEFINITION  Staphylococcus aureus strain 2010N06-097 plasmid p2010N06-097-3,
            complete sequence.
ACCESSION   NZ_CP131658
VERSION     NZ_CP131658.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36766262
            Assembly: GCF_038428225.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1491)
  AUTHORS   Chen,F.-J., Liao,Y.-C. and Chiu,Y.-T.
  TITLE     Rapid Diagnostics and Real-time Genomic Surveillance System for
            Pathogens from Culture
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1491)
  AUTHORS   Chen,F.-J., Liao,Y.-C. and Chiu,Y.-T.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JUL-2023) National Institute of Infectious Diseases
            and Vaccinology, National Health Research Institutes, No. 35, Keyan
            Road, Zhunan Town, Miaoli County 350, Taiwan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 04-JUL-2018
            Assembly Method                   :: CCBGpipe v. 1
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 80x
            Sequencing Technology :: Oxford Nanopore MinION and Illumina iSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038428225.1-RS_2024_04_24
            Annotation Date                   :: 04/24/2024 00:10:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,865
            CDSs (total)                      :: 2,784
            Genes (coding)                    :: 2,683
            CDSs (with protein)               :: 2,683
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 101
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 101
            Pseudo Genes (frameshifted)       :: 47 of 101
            Pseudo Genes (incomplete)         :: 44 of 101
            Pseudo Genes (internal stop)      :: 22 of 101
            Pseudo Genes (multiple problems)  :: 12 of 101
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP131658.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1491
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="2010N06-097"
                     /isolation_source="other"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="p2010N06-097-3"
                     /geo_loc_name="Taiwan"
                     /collection_date="2010"
                     /collected_by="NHRI"
     gene            complement(671..859)
                     /locus_tag="Q7641_RS14320"
                     /old_locus_tag="Q7641_14320"
     CDS             complement(671..859)
                     /locus_tag="Q7641_RS14320"
                     /old_locus_tag="Q7641_14320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001059805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_086094959.1"
                     /translation="MDKENTLKRRLKDAERIKKYLVRNNAPKTKISEIGRLVNFLDEEL
                     NREKIINTLTDVYFGNK"
                     /name="hypothetical protein"
     gene            complement(886..1350)
                     /locus_tag="Q7641_RS14325"
                     /old_locus_tag="Q7641_14325"
     CDS             complement(886..1350)
                     /locus_tag="Q7641_RS14325"
                     /old_locus_tag="Q7641_14325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664722.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_086094960.1"
                     /translation="MKERYGTVYKGKEEFINKESGEVVQFDKLYRAQTGGNFVKMYMEL
                     FGEMLGLLNKKGEVMQYLFKDLNLSSNTVVKTVRELAQETKTSTKTVTETLKAMEKGNI
                     IKRKTGVIMINPALLMRGDDNKRRFLLFEFEHFDRENELEHALNEYDSFK"
                     /name="replication/maintenance protein RepL"
     Typing          complement(887..1349)
                     /name="rep_cluster_2366"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.312"
                     /coverage="99.0"
                     /evalue="4.19e-148"
ORIGIN
        1 attccttata aaaactgtta tatcaactct aattgagatt ttacctagtt gaatcttctt
       61 ttctatataa agcgtcggag catatcaggg ggttatctaa cgtaaatgct acccttcggc
      121 tcgctttcgc tcggcattga cgtcagatac tgcaccccct gaaaccccat gctccgacag
      181 caaaaaggaa actttttgct gctcttccga cgcttattca cttcgttcat atttatatag
      241 aaaagaagtg aatgcattaa tgcttacatc taattttgtt atatggctag cattttggag
      301 ggggattggg ggcttgcccc caacaagtgt atttgcagtc acgaaatgag cgtagcgaat
      361 gaagtggcta gcaaatacga tgcttgccaa acctaaattt tacattgtga aatgagaaaa
      421 tttttgacga gcaaagcgaa aatgatagcc acttcagtgg cgattggtgc aggttttaag
      481 ttggattaat tccaacttaa taaccaatcc aaatcattaa agcgatatcg cgaagtcaaa
      541 aagcaattat tttacaatta aaatttatgg tgggttggtt ttgattgtat gtatagcttt
      601 tcctacgagt gtaacgagta gatcaaaagc tatacatata aaaaaggact agtgttagct
      661 agtcctttca tcatttatta ccaaaatata catctgttag tgtattaata attttttctc
      721 tatttagttc ttcatctaga aagttcacta agcgtcctat ttcgcttatt tttgtttttg
      781 gggcattatt ccttaccaga tactttttta ttcgctctgc gtcctttaaa cgccttttaa
      841 gagtattttc tttatccatt agttcacttc cttgttataa tggatttatt taaagctatc
      901 atattcattt aaagcgtgtt ctaattcgtt ttctctatca aagtgttcaa attcaaataa
      961 aagaaaacgt cttttgttat catcaccacg cattagaaga gctggattaa tcattattac
     1021 tccagttttt ctttttataa tatttccttt ttccattgct tttagggttt ctgttactgt
     1081 ttttgtactt gtttttgttt cttgtgctag ttctctaact gtttttacta ctgtattact
     1141 tgagagattt aaatctttaa acaaatattg cattacttct ccctttttgt tcaataaccc
     1201 tagcatttct ccaaataact ccatgtacat ttttacaaag tttccacctg tttgtgctct
     1261 atatagctta tcaaactgta caacttctcc agactcttta tttataaact cttctttgcc
     1321 tttatatact gttccatagc gttctttcac ttaatctcac ctcacttttt tatgtctcaa
     1381 tagtacatta taagtaatct aattacaaca aatagtgtaa aaaaaagttt caaaataagg
     1441 ggtatgtagt aaaaaactac tacaaaacat gtagaaaagt actacatcga a
//
