LOCUS       NZ_CP130680             3452 bp    DNA     circular CON 01-AUG-2023
DEFINITION  Klebsiella pneumoniae strain KP9 plasmid unnamed6, complete
            sequence.
ACCESSION   NZ_CP130680
VERSION     NZ_CP130680.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36621066
            Assembly: GCF_030552975.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3452)
  AUTHORS   Han,R.
  TITLE     Complete gene sequence of KP9
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3452)
  AUTHORS   Han,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2023) Department of Pharmacology and Toxicology,
            College of Veterinary Medicine, Henan Agricultural University,
            Longzihu, Zhengzhou, Henan 450046, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 20-JUL-2023
            Assembly Method                   :: SPAdes v. v3.12
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 182.0x
            Sequencing Technology             :: Illumina NovaSeq; PacBio Sequel
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 16:18:36
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,678
            CDSs (total)                      :: 5,557
            Genes (coding)                    :: 5,401
            CDSs (with protein)               :: 5,401
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 156
            CDSs (without protein)            :: 156
            Pseudo Genes (ambiguous residues) :: 0 of 156
            Pseudo Genes (frameshifted)       :: 53 of 156
            Pseudo Genes (incomplete)         :: 99 of 156
            Pseudo Genes (internal stop)      :: 23 of 156
            Pseudo Genes (multiple problems)  :: 19 of 156
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP130680.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3452
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP9"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed6"
                     /geo_loc_name="China"
                     /lat_lon="34.44 N 113.42 E"
                     /altitude="108 m"
                     /collection_date="2021-05-30"
                     /collected_by="Pharmacology Toxicology Laboratory, School
                     of Veterinary Medicine"
     gene            1..1533
                     /locus_tag="Q4E97_RS28385"
                     /old_locus_tag="Q4E97_28385"
     CDS             1..1533
                     /locus_tag="Q4E97_RS28385"
                     /old_locus_tag="Q4E97_28385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017899153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NERD domain-containing protein"
                     /protein_id="WP_110917701.1"
                     /translation="MKKSVVRQVLEMSGPCISSDLAERIQWQHPSMSPEAIRKMISRST
                     DIGKLPFLKFSHNRRFIYLKDDFGSFKFWRALEKCMYEANSTYSHAILAVINNGGYLKV
                     KDFGIVSGSPIKQAKHLSYETVLRNLLSAKILRAVYIDGVGDCVLINNNIANDVNIRTM
                     ANCESFFDKPILELVKAWLRNLGLVAFNQIKTKYDGEGNPVVGSFEWDMTAPSYVSPLA
                     EYVGGKLMPGFVACDFSLGFNRDEITTAAAETFIRKVQMTKSSRASQRIMFVIFARRFG
                     KIAFNKLRSEGVLAVTIANAFGNKVDESLTRLSRVVQGSLSIEKHPDELLQMVKDLESV
                     SGENGNLRGYIFELFVSSQISNFYGLGNIYINREYKINGKHAEADVVLESSDDIYIIEC
                     KNVKVLPSTELTRWMKERVPTINSYYKINNLEKKNIHHYLWVTGNVYNNDLKRLDSFKK
                     NNKSIDVDYLFGEHLDDFFYNKKRVFNLYRKVISPDYKKGVMPDFELEDDFF"
                     /name="NERD domain-containing protein"
     gene            2298..2489
                     /locus_tag="Q4E97_RS28390"
                     /old_locus_tag="Q4E97_28390"
     CDS             2298..2489
                     /locus_tag="Q4E97_RS28390"
                     /old_locus_tag="Q4E97_28390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(1582..2061)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.758"
                     /coverage="91.0"
                     /evalue="0.0"
ORIGIN
        1 atgaaaaaaa gtgttgttag acaagtgctt gaaatgagcg ggccatgcat ctcttcagat
       61 cttgcagaga gaattcagtg gcaacatccc tcaatgtccc ctgaagcgat acgtaaaatg
      121 atctcgcgaa gcacggacat aggtaagctg ccatttttga aattcagcca taacaggaga
      181 ttcatttatc taaaagatga ttttggcagt ttcaaatttt ggcgagctct cgaaaagtgc
      241 atgtacgaag caaactcaac ttactcacac gcgatacttg ccgtaataaa taatggcggt
      301 tatttgaagg tgaaagattt tgggattgtg tctggatctc ctataaaaca agctaaacat
      361 ttaagttatg aaacagttct aagaaatcta ctttcggcaa aaatacttag agctgtgtat
      421 attgatggag ttggtgattg cgtactgata aataacaaca tagccaacga tgttaatatt
      481 agaacaatgg caaattgcga atcctttttt gacaaaccaa tattggagct tgttaaagct
      541 tggttgagga atttaggcct agtcgctttt aatcagataa aaacaaaata cgatggggag
      601 ggaaatccag ttgtaggctc ttttgaatgg gatatgaccg ctccaagtta cgtttcccct
      661 ctcgctgaat atgtcggcgg aaaactgatg cctggtttcg ttgcctgtga tttttctctc
      721 ggctttaatc gtgatgaaat tactaccgct gcagcagaaa cattcattag aaaagtccag
      781 atgaccaagt cttctcgagc gagtcagagg ataatgtttg ttattttcgc aaggcgtttc
      841 ggcaaaatag ccttcaataa gttgagaagt gagggggttc tggctgtaac tatagcaaat
      901 gcgtttggta ataaagttga tgaaagctta accaggttgt cgagggtggt tcagggttct
      961 ttgtccattg aaaagcatcc agatgaattg cttcagatgg ttaaagatct tgagtctgtt
     1021 tctggagaga atggcaattt gagagggtat atttttgagc tttttgtatc ctcgcaaatt
     1081 tctaattttt atggtcttgg taatatttac attaatagag agtataagat aaatggtaag
     1141 catgcagaag ctgatgttgt attagagagt agtgacgata tttatataat agagtgcaag
     1201 aatgttaagg tcttaccttc aactgaactt acgcgttgga tgaaagaaag ggttccaact
     1261 ataaactctt actataaaat aaataattta gaaaaaaaga atatccacca ttatttgtgg
     1321 gttacaggta atgtgtacaa caacgattta aaaaggttag actcttttaa gaaaaataat
     1381 aagagtatcg atgttgatta tttgtttggt gagcatttgg atgatttctt ttacaataaa
     1441 aagcgggtgt tcaacttata tagaaaagtc atttcacctg attataaaaa aggcgtaatg
     1501 cctgattttg agttagagga cgattttttc tagctactgc gtttcttgac gatagcgctt
     1561 tgaaaggcgt atcttccatc tctgaaacga aaaaaccacc cggcaaggtg gtttttcgaa
     1621 ggttcaggaa accggcaagt ttctgaaccg tggtaactgg cttaaacgga gcgcagtgac
     1681 caaatctgtc cttccagtgt agccgtagtc aggtcaacac ttcaagaact ctgtgtatgc
     1741 ttgtacacgc ctctccgctc cgtaaaccag ataccaatgg ctgctgccag tggcgttttg
     1801 tcgtgtcttt ccgggttgga ctcaagacga tagttaccgg ataaggcgca gcagtcggac
     1861 tgaacggggg gttcgtgcat acagtccagc ttggagcgaa ctgcctaccc ggaactgagt
     1921 gtcaggcgtg gaatgagaca aacgcggcca taacagcgga gtgacaccgg taaaccgaaa
     1981 ggcaggaaca ggagagcgca cgagggagcc accgggggga aacgcccggt atctttaagt
     2041 cctgtcgggt ttcgccacca ctgatttgag cgtcagattt cttgatgctt gtcagggggg
     2101 cggagcctat ggaaaaacgc cccggcgggg cgtggccttt tcgcccttgt ccttagcttt
     2161 cgttatgctt accgttacgt tacctgctta tcttccctcc gctcgccgca gactcatgac
     2221 cgaacggagt gagcgaatga gcgaggaagc ggaaaaccat cagaacgtac agtaagcact
     2281 ttcgcgctgg ggccttcatg aacaaacaac aaaagactgc cgttaacatg gctaaattca
     2341 tccaggatca gtccctgctt cttctggaca ggcttaatga gctggatctg gatcatgagg
     2401 ctgatttctg cgagaaactc catgaggatg cggaacgcct ttaccgaagc ctgtcagcgc
     2461 gcctgaatga gcagcaggac ggtgcgtaat ggctccgttc tgggtattac cggagtaata
     2521 ccggcatcgc cttaattttc attgtgttag cgcttaatat tattaccccg gtaataccca
     2581 gaatccctgt attttttctt ttttatttat ttttcatgaa gttgcgatga aaatcgcagc
     2641 tgcgttaggt gtatgaccat tttgaggttg aaaaataatc aaccatggcg ggtgatttac
     2701 gcaggttaag gggagatcgt gacaaaaaaa gcgttcctca ctgtatcgtt catgcctgca
     2761 tgaacgggtt attcttcctg actacagaat tacatcgctc cttcaggtca tacatcactt
     2821 ttacaacact tttgcatcac ttttacatca cttttacatc acttttacat cattccttca
     2881 gctcatacgt cacttccatc ctctgtgcca tttgtacatc acccccttcc tgaacgtgct
     2941 gaaaacgggt tttccggctg cgccggcaac gcctcacggc cacgcaataa attgcgtccc
     3001 cgttcaccgt tttcgggtaa gaagaacatc ggaaacagga cttaccccgg ctgaatggcg
     3061 tgaatttccg cgctatgcac ttgtgcgcat actcatgcat gccgtaaaaa cagagcctgc
     3121 gcgtttctgg cgggttttcg ggtggtttgt tgcctgtttt accggtttcc cgtcagaaac
     3181 gccctgaggg cctctgaggc ggtgctgata acggatgtta tggtaaatgg agtagctgat
     3241 agttcgataa aaaaatgtca caaagctatc tttatgattt aaaaggatta aataattata
     3301 aagacgatat ttctttgtgc ttaatttaaa ttaagtaatt aactatctga ttttcaattg
     3361 ttttttatag tcattttttt aaaaagactg cgcgttatta cacgtagtgt aatgttataa
     3421 atagcgtagt gtgacagaaa taaggtgagg ct
//
