LOCUS       NZ_CP130673             1201 bp    DNA     circular CON 01-AUG-2023
DEFINITION  Escherichia coli strain SM107 plasmid pSM107_4, complete sequence.
ACCESSION   NZ_CP130673
VERSION     NZ_CP130673.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36664847
            Assembly: GCF_030552915.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Bao,D.
  TITLE     Genomic characteristics of a carbapenem resistant Escherichia coli
            isolate
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1201)
  AUTHORS   Bao,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-JUL-2023) Department of Clinical laboratory, Sir Run
            Run Shaw Hospital, School of Medicine, Zhejiang University, 3
            Qingchun East Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: Oxford Nanopore GridION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 16:45:42
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,424
            CDSs (total)                      :: 5,301
            Genes (coding)                    :: 5,066
            CDSs (with protein)               :: 5,066
            Genes (RNA)                       :: 123
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 93
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 235
            CDSs (without protein)            :: 235
            Pseudo Genes (ambiguous residues) :: 0 of 235
            Pseudo Genes (frameshifted)       :: 85 of 235
            Pseudo Genes (incomplete)         :: 168 of 235
            Pseudo Genes (internal stop)      :: 56 of 235
            Pseudo Genes (multiple problems)  :: 59 of 235
            Pseudo Genes (short protein)      :: 2 of 235
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP130673.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="SM107"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pSM107_4"
                     /geo_loc_name="China: Sanmen"
                     /collection_date="2022-10-26"
                     /collected_by="Danni Bao"
ORIGIN
        1 ggaggccagt gccaatccgg ttcgtggaaa tcaatcggtt ctgctgcgcc gtggacatca
       61 gtaacatcct tcaccttgta cccaaccaca acgaaggctc tgggaaaatt caaactttgc
      121 gttaatacat atcgtataga cggaaaggaa actgcaatga caagagtctg gccgacagat
      181 aatccagatg taaacggcga gatgaattgg agtgcgtaca atggcacatt gtatagcagc
      241 tattacatca ctgttcactg tttccgttga aagctctgtc gcacattatc tggcacatac
      301 agctactgag cggaaacagc tcgtgatagt tccggtacct ccgacaaccc aacgtttatt
      361 attccagtct gggtaacttg agtctggtga gttaaacggg ttccggttat cctgggacca
      421 agccgttaac tgatacccac cagaaactaa atcactgcca tcaggacata ccgcatagga
      481 cggtgtatgc ccacatccac ttattccgta taccgtgaaa cgttctttct tttggctact
      541 tgtccacgaa ccggattggc actggcctcc gtgccaatcc ggtgcctgga aatatacaac
      601 gctgaacttc accacaagca cgtacaacat cggcaaaaac acatacaata agagtattgg
      661 cgtgcacgct tattgcgcgt ggacgtacct gaatggttcc ccctttggcg gttttcaaca
      721 agtgtattcc gacagcaaca ataactggta tgtgaacaat tacgcttggg ataactacgc
      781 ctccggtggc acgatctctg tgacgtgcct taatctcccc aatgccggcg tctgaaggtc
      841 tcacgaatca ggtctggtat ccccagacag aaaaattgcc tcgcccgcag gaatagttct
      901 cggtcgggta tgaagtgatc tgatacgacg aaccactggg cacggcaaat gtgatgaata
      961 ccgtcttcgc ataatcagga ttgttattgg cgttaaccgc aacctggctg ccgttaacaa
     1021 atccctgtag tttggctgga ttcgcacagg aggaaccgcc gtttcctcca ctggcgtata
     1081 caaacagtgt tcccgtaccg ttgttcgaac ctgaaaagct gccgctatga gaacccagat
     1141 ttgtatacgt cccgtttgtt gttcctaaac tcttccacac accggattgg cacggaggcc
     1201 a
//
