LOCUS       NZ_CP130129             2000 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Schwarzengrund strain
            SECVM-5 plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP130129
VERSION     NZ_CP130129.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35361192
            Assembly: GCF_030505995.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Schwarzengrund
  ORGANISM  Salmonella enterica subsp. enterica serovar Schwarzengrund
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2000)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Complete genome sequences of 17 Salmonella enterica serovar
            Schwarzengrund strains carrying IncFIB-IncFIC (IncFII) fusion
            plasmid
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2000)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) Office of Applied Research and Safety
            Assessment, CFSAN, U.S. Food and Drug Administration, 8301 Muirkirk
            Rd MOD1, Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hybrid assembly using Unicyler v. unspecified
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 37.1x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 12:14:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,977
            CDSs (total)                      :: 4,855
            Genes (coding)                    :: 4,685
            CDSs (with protein)               :: 4,685
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 170
            CDSs (without protein)            :: 170
            Pseudo Genes (ambiguous residues) :: 0 of 170
            Pseudo Genes (frameshifted)       :: 77 of 170
            Pseudo Genes (incomplete)         :: 118 of 170
            Pseudo Genes (internal stop)      :: 30 of 170
            Pseudo Genes (multiple problems)  :: 49 of 170
            Pseudo Genes (short protein)      :: 1 of 170
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP130129.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2000
                     /organism="Salmonella enterica subsp. enterica serovar
                     Schwarzengrund"
                     /mol_type="genomic DNA"
                     /strain="SECVM-5"
                     /serovar="Schwarzengrund"
                     /isolation_source="Chicken Wings"
                     /sub_species="enterica"
                     /db_xref="taxon:340190"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA"
                     /lat_lon="37.0902 N 95.7129 W"
                     /collection_date="2013"
                     /collected_by="FDA"
     gene            complement(join(1903..2000,1..55))
                     /locus_tag="QPE06_RS24880"
                     /old_locus_tag="QPE06_24880"
     CDS             complement(join(1903..2000,1..55))
                     /locus_tag="QPE06_RS24880"
                     /old_locus_tag="QPE06_24880"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_165405807.1"
                     /translation="MSNPSLSNQPAQPTLRNLIAELRERYGVESEEGPALRDLVGTLSN
                     PQGKP"
                     /name="hypothetical protein"
     gene            complement(1213..1770)
                     /locus_tag="QPE06_RS24885"
                     /old_locus_tag="QPE06_24885"
     CDS             complement(1213..1770)
                     /locus_tag="QPE06_RS24885"
                     /old_locus_tag="QPE06_24885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017384791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="WP_023281049.1"
                     /translation="MANVGYIRVSTTDQHTDRQLAGVQLDKVFTDKVSGKGTDRPGLQA
                     MLEYVREGDTVHVHEISRLARNTADLLAIVEGLTARKVAVQFHKEGISTGEGSAVGNLV
                     LTLLASVAQMERELMLERQREGYAAAKAAGRIAGRGKGKAIDRSAVLADLAGGDSIRTV
                     ATRHGISTRTVQNIKAEANQAG"
                     /name="recombinase family protein"
ORIGIN
        1 tcaagttacg cagggtaggc tgtgctggct ggttacttag ggaggggtta ctcataggtt
       61 gctctcctgt gctggtggct ggctggttac ttagggttac tcatagctgg gctatctccg
      121 ggtgccttac tcgtgggtta ctcactgcct actctcgctc tgggttctct cgctctgggt
      181 tgtctctctg ggtagtctcc tctctgggtt acccttgccc gtgtctctct cctccctccc
      241 tcccttccct ccgggttacc gccgtaacag atacgaaagg cgttaaagcc gcattcgacc
      301 gttctgttac tgtaggggtg cattatcacc tgggtggctt catgctgtac ggcttgctgt
      361 gtatataggg ctatacatag ggctgctagt gcaggttccc tagtgctgcc tacggcggtg
      421 ggccgggtag ggatagtatg gggacttgga gctatgggca caggctcact acctccgcgc
      481 acaatttcat agtaataggg ctgcgggtat aagggttgct aaggtcgcac atagggtagc
      541 tagcagggat gcctgaagct cctgtgcggc tgtataacgg gacgtaggcc ggatgtgtgg
      601 gatagggcta ccgggttgct ctttggcgct ctccgggctg ctggtggcct ctgagctaca
      661 caggggcagt gtgttcccgt agtgccgggt tacggtaggt atagggcttg tgtgaccggg
      721 tatgctaaac agatacagat aggccgctcg gctgctgtgt accttattcg ggcgctccac
      781 cagccgcagg caatagctgc ctaatgcccc gatgtggtac tagccacagt ggagcgtagc
      841 gacggcctca gtagtgccgt ggtggaggtg cagcgcgttc cctagtcctg ctgctatggt
      901 cccttgagcc gggcggtatc aggtactgtt atcgtacagt gagacggtgg cagagcctgc
      961 atatcgtgtg caggtacgtt aagcaccaca gttagcctgt ttggtccggg ccagactgac
     1021 cagctcaatt ggatagcgaa gtgttaatgt cgttggatgg ttgtgtcgag gtagtgacaa
     1081 gctagccccg cgttgctact atctcagttg tctaggctgg tgaagtagct acgcgctatc
     1141 aggaatcaga ttacatggcc ccgctggtta acacaactgc ggggctttgt tcttattgga
     1201 ggtagcaccc tgttaacctg cctgattagc ctcggccttg atgttctgta cggtgcgtgt
     1261 ggatatgcca tgccgggtag ctactgtccg tatggagtca cctccggcaa ggtctgcgag
     1321 tacagcgcta cggtctatgg ccttaccctt accccgtccg gctatacggc ctgctgcttt
     1381 agctgctgca tacccttccc gctgccgttc tagcataagc tcacgctcca tctgtgccac
     1441 gctagccagc agggttagca ctaggttgcc tacggcgctg ccctctccgg tgctgatacc
     1501 ttccttgtgg aactgtaccg ctaccttacg ggctgtcagt ccctctacga tagccagcag
     1561 gtccgcagtg ttccgggcta gcctgcttat ctcatgtacg tgtacggtgt cgccttctct
     1621 cacatactcc agcatggcct gtagtccagg tcggtctgta cccttaccgc tcaccttatc
     1681 cgtgaatacc ttgtccaact gtaccccggc taactgtcgg tcggtgtgct ggtctgtggt
     1741 tgatacccgg atgtaaccta cgttagccat gctgtcctct ctgtagcaat atgtctgtcc
     1801 ggtggtatat tactacagtg tggtactgtg tcaaggctaa ttactacagc tacagggcta
     1861 taaccgggta ttctgtctgt ggtagttaag cgtggtatat tactacggct taccctgtgg
     1921 gttactcagg gtgcctacca gatctctcag ggccgggcct tcctcagact ctacgccgta
     1981 ccgctcccgt agttcggcta
//
