LOCUS       NZ_CP130108             2569 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Schwarzengrund strain
            SECVM-14 plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP130108
VERSION     NZ_CP130108.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35361197
            Assembly: GCF_030505895.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Schwarzengrund
  ORGANISM  Salmonella enterica subsp. enterica serovar Schwarzengrund
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Complete genome sequences of 17 Salmonella enterica serovar
            Schwarzengrund strains carrying IncFIB-IncFIC (IncFII) fusion
            plasmid
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) Office of Applied Research and Safety
            Assessment, CFSAN, U.S. Food and Drug Administration, 8301 Muirkirk
            Rd MOD1, Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hybrid assembly using Unicyler v. unspecified
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 30.5x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 12:07:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,963
            CDSs (total)                      :: 4,841
            Genes (coding)                    :: 4,680
            CDSs (with protein)               :: 4,680
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 77 of 161
            Pseudo Genes (incomplete)         :: 109 of 161
            Pseudo Genes (internal stop)      :: 30 of 161
            Pseudo Genes (multiple problems)  :: 49 of 161
            Pseudo Genes (short protein)      :: 1 of 161
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP130108.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Salmonella enterica subsp. enterica serovar
                     Schwarzengrund"
                     /mol_type="genomic DNA"
                     /strain="SECVM-14"
                     /serovar="Schwarzengrund"
                     /isolation_source="Chicken Wings"
                     /sub_species="enterica"
                     /db_xref="taxon:340190"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA"
                     /lat_lon="37.0902 N 95.7129 W"
                     /collection_date="2013"
                     /collected_by="FDA"
     gene            join(2516..2569,1..912)
                     /gene="mobV"
                     /locus_tag="QPE10_RS24810"
                     /old_locus_tag="QPE10_24810"
     CDS             join(2516..2569,1..912)
                     /gene="mobV"
                     /locus_tag="QPE10_RS24810"
                     /old_locus_tag="QPE10_24810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010657476.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_052928736.1"
                     /translation="MAFAIMRAKKLNGMGAVAASLQHCYRDRDTPNADQTRTAENEHRA
                     ATSTDEAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWTKATSEQQADFFDQAHKWLAE
                     KYGADRIITATIHRDETSPHLSAFVVPLTADGRLSAKDFIGNRAKMTADQTSFAKAVQH
                     LGLERGIERSRATHTSIKQHYAAIEKGTKGEVTITPEAVQPRVLKKGLFSRQEETPEAV
                     AARLTDAINKGHAGTVANAAVSAQNARRAREMQKTMVDQQKKLKTLQEPFKGLSREQVA
                     EVIKMATTMQRENEAAKAAKLQRQKEQRQQRRSQDRGFSR"
                     /name="mobV"
     gene            complement(914..1555)
                     /locus_tag="QPE10_RS24815"
                     /old_locus_tag="QPE10_24815"
     CDS             complement(914..1555)
                     /locus_tag="QPE10_RS24815"
                     /old_locus_tag="QPE10_24815"
                     /inference="COORDINATES: protein motif:HMM:NF017542.2"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_052928735.1"
                     /translation="MNKQNIHISPEAQARVRQQELAEQDEAAKRAKKNYNFVQIEKRAL
                     RLVRELYEANPAAGKLLFILAEKMNRQNALVCSYDTMSKITGLGRTTLYKAVKYLKEHN
                     WVEVIKVGTANAYVINSRVFWQSHGDKKLTVFHATIVASSDEQDTPVEDWDKVKLNHFP
                     FLSHDDDVTVTNEQLPPPDQEELDFHKTPEPCFLDGDEPVEPPTHITLPK"
                     /name="replication/maintenance protein RepL"
     Typing          2..522
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.103"
                     /coverage="89.0"
                     /evalue="2.04e-113"
ORIGIN
        1 gcctcgttgc agcactgcta ccgagaccga gacacgccca atgccgacca gacgcgaacg
       61 gcagaaaacg aacacagagc cgccacatca accgatgagg caatggggcg cttgcgtgag
      121 ttgctgccag agaagcggcg caaagatgcg gtgctggcgg ttgagtacgt catgacggca
      181 tcgcccgaat ggtggacgaa agccaccagc gaacagcagg cggatttctt cgaccaggca
      241 cacaagtggc tggccgaaaa atacggcgct gaccgcatca tcacggccac cattcaccgc
      301 gacgagacca gcccacacct aagcgcgttt gtggtgccgt tgaccgctga cggacgtttg
      361 agcgccaagg atttcattgg caacagggcg aaaatgacgg ctgaccagac cagctttgcc
      421 aaagctgtgc agcacctagg gcttgaaagg ggcatcgagc gcagcagggc aacgcatacc
      481 agcatcaagc agcattacgc cgccatcgaa aagggcacca aaggggaagt gaccatcacc
      541 cccgaagccg tccagccaag ggtgttgaag aaggggcttt tcagtcgtca ggaagaaacc
      601 ccagaagctg tagcagctcg tttaaccgat gcaatcaaca aaggtcatgc gggaacggtt
      661 gcaaatgccg ctgtaagcgc ccagaacgct cgtagagcgc gagaaatgca aaagacaatg
      721 gttgaccagc agaagaagct aaaaacgctt caggagccgt ttaaggggct ttcacgcgaa
      781 caggtagcgg aggtcatcaa gatggccaca accatgcaac gggaaaacga agcggccaag
      841 gccgcgaagt tgcaacgcca aaaggaacag cgacagcagc gacgcagcca agacaggggg
      901 tttagcagat aaatcacttg ggcagcgtga tgtgagttgg cggctcgacg ggctcgtcac
      961 cgtctaagaa acacggctct ggtgtcttgt gaaagtccaa ttcctcttgg tctggcggcg
     1021 gtagctgctc gtttgtcacg gtgacgtcat cgtcgtgact gaggaacggg aaatggttca
     1081 atttcacctt gtcccagtcc tctacggggg tgtcttgttc gtcgcttgat gccacgatag
     1141 tagcgtggaa gaccgttagt tttttatcgc cgtgagactg ccagaacacg cgggaattga
     1201 tgacataagc gttagctgta cccaccttaa tgacttcaac ccaattgtgt tctttgaggt
     1261 atttcacggc cttgtagagc gttgttctgc ctagtcctgt gatctttgac atggtgtcat
     1321 agctgcaaac caaagcgttt tgtctgttca ttttttcggc cagtatgaac agcaatttgc
     1381 cagctgctgg gttggcttcg tacagctcac gaacaagccg caaggctcgt ttttcaatct
     1441 gcacgaagtt gtaattcttc ttcgctcgct tagctgcttc gtcttgttct gcaagctctt
     1501 gttgccttac acgggcttgc gcctcggggc ttatgtgtat gttctgttta ttcatagcat
     1561 acgttccatt tgctgaatca attgttcacc tataggcaca caatacgttc acttttaatg
     1621 aacgtcaagt gccaccaaag tgatatatgt tcactctagg ggtgaacata tatgttcgcc
     1681 ctaggggtga acataaggaa acaggctcaa agccaataac gacaagggtt taagactgtt
     1741 tttagtagtt gtcccctctc tatctcatag ggggcgttgc cccctgccgc acttcgtttg
     1801 gctaaccccc ctgtcgcttc gctcctgaaa atgcctgccc tgcgggcaga aggcttttgt
     1861 tacttgcagc ggcctacggc ctcgctctaa gggggcgttg ccccctagcg cgcttcgctt
     1921 gcctccccca cgttcgccac gtggcagggg ggcaggacgg gcggcctacg gcctacttac
     1981 ctgcccccca tgcctaagcg tgtggtcgtt ccagcagcgt caagggtacg gcttcgccca
     2041 cgtactcacc cgttcggtgc tcgccttcgg ctgcgctccg cgtgcggctt ccgtgcgtgc
     2101 ccttgacacc gcttccactc aaatggaacc gaacggaaag ggggtcaagg gaaccgtgga
     2161 ataccgcagc cccaacgggg cgaggatatg ccgcgaaagt cccttgatgc ccttggagtg
     2221 acccacgctc ccgtctgggg tttgggttgt gcaggccgaa ggccggaact gcccacaccc
     2281 ctgacgacag agggcgactc gttcccccca gcggggggcg gaggggggag aatgcaacga
     2341 gtgaaacgag gcgcagggcg atagcccgaa gagcaagccg caggcgctgc aacccgcttg
     2401 cgggtcacga ttttacgaag taaagtctag tgagtactct ttgactccaa agaggcccgc
     2461 cggaggcact gcgttttccg tcgggatggc accagcacag accgaggggg aacgcatggc
     2521 ttttgcgatc atgagagcga aaaagctcaa cggcatgggg gctgtcgcg
//
