LOCUS       NZ_CP130085             2569 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Schwarzengrund strain
            SEWLSH-7 plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP130085
VERSION     NZ_CP130085.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35361203
            Assembly: GCF_030505775.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Schwarzengrund
  ORGANISM  Salmonella enterica subsp. enterica serovar Schwarzengrund
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Complete genome sequences of 17 Salmonella enterica serovar
            Schwarzengrund strains carrying IncFIB-IncFIC (IncFII) fusion
            plasmid
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) Office of Applied Research and Safety
            Assessment, CFSAN, U.S. Food and Drug Administration, 8301 Muirkirk
            Rd MOD1, Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hybrid assembly using Unicyler v. unspecified
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 26.1x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 12:07:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,958
            CDSs (total)                      :: 4,836
            Genes (coding)                    :: 4,673
            CDSs (with protein)               :: 4,673
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 163
            CDSs (without protein)            :: 163
            Pseudo Genes (ambiguous residues) :: 0 of 163
            Pseudo Genes (frameshifted)       :: 78 of 163
            Pseudo Genes (incomplete)         :: 110 of 163
            Pseudo Genes (internal stop)      :: 30 of 163
            Pseudo Genes (multiple problems)  :: 49 of 163
            Pseudo Genes (short protein)      :: 1 of 163
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP130085.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Salmonella enterica subsp. enterica serovar
                     Schwarzengrund"
                     /mol_type="genomic DNA"
                     /strain="SEWLSH-7"
                     /serovar="Schwarzengrund"
                     /isolation_source="Gallbladder"
                     /sub_species="enterica"
                     /db_xref="taxon:340190"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA"
                     /lat_lon="37.0902 N 95.7129 W"
                     /collection_date="2017"
                     /collected_by="Wisconsin State Laboratory of Hygiene"
     gene            complement(join(2229..2569,1..625))
                     /gene="mobV"
                     /locus_tag="QPE08_RS24785"
                     /old_locus_tag="QPE08_24785"
     CDS             complement(join(2229..2569,1..625))
                     /gene="mobV"
                     /locus_tag="QPE08_RS24785"
                     /old_locus_tag="QPE08_24785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010657476.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_052928736.1"
                     /translation="MAFAIMRAKKLNGMGAVAASLQHCYRDRDTPNADQTRTAENEHRA
                     ATSTDEAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWTKATSEQQADFFDQAHKWLAE
                     KYGADRIITATIHRDETSPHLSAFVVPLTADGRLSAKDFIGNRAKMTADQTSFAKAVQH
                     LGLERGIERSRATHTSIKQHYAAIEKGTKGEVTITPEAVQPRVLKKGLFSRQEETPEAV
                     AARLTDAINKGHAGTVANAAVSAQNARRAREMQKTMVDQQKKLKTLQEPFKGLSREQVA
                     EVIKMATTMQRENEAAKAAKLQRQKEQRQQRRSQDRGFSR"
                     /name="mobV"
     gene            1586..2227
                     /locus_tag="QPE08_RS24790"
                     /old_locus_tag="QPE08_24790"
     CDS             1586..2227
                     /locus_tag="QPE08_RS24790"
                     /old_locus_tag="QPE08_24790"
                     /inference="COORDINATES: protein motif:HMM:NF017542.2"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_052928735.1"
                     /translation="MNKQNIHISPEAQARVRQQELAEQDEAAKRAKKNYNFVQIEKRAL
                     RLVRELYEANPAAGKLLFILAEKMNRQNALVCSYDTMSKITGLGRTTLYKAVKYLKEHN
                     WVEVIKVGTANAYVINSRVFWQSHGDKKLTVFHATIVASSDEQDTPVEDWDKVKLNHFP
                     FLSHDDDVTVTNEQLPPPDQEELDFHKTPEPCFLDGDEPVEPPTHITLPK"
                     /name="replication/maintenance protein RepL"
     Typing          complement(51..625)
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.75"
                     /coverage="98.0"
                     /evalue="3.48e-126"
ORIGIN
        1 tcttcaacac ccttggctgg acggcttcgg gggtgatggt cacttcccct ttggtgccct
       61 tttcgatggc ggcgtaatgc tgcttgatgc tggtatgcgt tgccctgctg cgctcgatgc
      121 ccctttcaag ccctaggtgc tgcacagctt tggcaaagct ggtctggtca gccgtcattt
      181 tcgccctgtt gccaatgaaa tccttggcgc tcaaacgtcc gtcagcggtc aacggcacca
      241 caaacgcgct taggtgtggg ctggtctcgt cgcggtgaat ggtggccgtg atgatgcggt
      301 cagcgccgta tttttcggcc agccacttgt gtgcctggtc gaagaaatcc gcctgctgtt
      361 cgctggtggc tttcgtccac cattcgggcg atgccgtcat gacgtactca accgccagca
      421 ccgcatcttt gcgccgcttc tctggcagca actcacgcaa gcgccccatt gcctcatcgg
      481 ttgatgtggc ggctctgtgt tcgttttctg ccgttcgcgt ctggtcggca ttgggcgtgt
      541 ctcggtctcg gtagcagtgc tgcaacgagg ccgcgacagc ccccatgccg ttgagctttt
      601 tcgctctcat gatcgcaaaa gccatgcgtt ccccctcggt ctgtgctggt gccatcccga
      661 cggaaaacgc agtgcctccg gcgggcctct ttggagtcaa agagtactca ctagacttta
      721 cttcgtaaaa tcgtgacccg caagcgggtt gcagcgcctg cggcttgctc ttcgggctat
      781 cgccctgcgc ctcgtttcac tcgttgcatt ctcccccctc cgccccccgc tggggggaac
      841 gagtcgccct ctgtcgtcag gggtgtgggc agttccggcc ttcggcctgc acaacccaaa
      901 ccccagacgg gagcgtgggt cactccaagg gcatcaaggg actttcgcgg catatcctcg
      961 ccccgttggg gctgcggtat tccacggttc ccttgacccc ctttccgttc ggttccattt
     1021 gagtggaagc ggtgtcaagg gcacgcacgg aagccgcacg cggagcgcag ccgaaggcga
     1081 gcaccgaacg ggtgagtacg tgggcgaagc cgtacccttg acgctgctgg aacgaccaca
     1141 cgcttaggca tggggggcag gtaagtaggc cgtaggccgc ccgtcctgcc cccctgccac
     1201 gtggcgaacg tgggggaggc aagcgaagcg cgctaggggg caacgccccc ttagagcgag
     1261 gccgtaggcc gctgcaagta acaaaagcct tctgcccgca gggcaggcat tttcaggagc
     1321 gaagcgacag gggggttagc caaacgaagt gcggcagggg gcaacgcccc ctatgagata
     1381 gagaggggac aactactaaa aacagtctta aacccttgtc gttattggct ttgagcctgt
     1441 ttccttatgt tcacccctag ggcgaacata tatgttcacc cctagagtga acatatatca
     1501 ctttggtggc acttgacgtt cattaaaagt gaacgtattg tgtgcctata ggtgaacaat
     1561 tgattcagca aatggaacgt atgctatgaa taaacagaac atacacataa gccccgaggc
     1621 gcaagcccgt gtaaggcaac aagagcttgc agaacaagac gaagcagcta agcgagcgaa
     1681 gaagaattac aacttcgtgc agattgaaaa acgagccttg cggcttgttc gtgagctgta
     1741 cgaagccaac ccagcagctg gcaaattgct gttcatactg gccgaaaaaa tgaacagaca
     1801 aaacgctttg gtttgcagct atgacaccat gtcaaagatc acaggactag gcagaacaac
     1861 gctctacaag gccgtgaaat acctcaaaga acacaattgg gttgaagtca ttaaggtggg
     1921 tacagctaac gcttatgtca tcaattcccg cgtgttctgg cagtctcacg gcgataaaaa
     1981 actaacggtc ttccacgcta ctatcgtggc atcaagcgac gaacaagaca cccccgtaga
     2041 ggactgggac aaggtgaaat tgaaccattt cccgttcctc agtcacgacg atgacgtcac
     2101 cgtgacaaac gagcagctac cgccgccaga ccaagaggaa ttggactttc acaagacacc
     2161 agagccgtgt ttcttagacg gtgacgagcc cgtcgagccg ccaactcaca tcacgctgcc
     2221 caagtgattt atctgctaaa ccccctgtct tggctgcgtc gctgctgtcg ctgttccttt
     2281 tggcgttgca acttcgcggc cttggccgct tcgttttccc gttgcatggt tgtggccatc
     2341 ttgatgacct ccgctacctg ttcgcgtgaa agccccttaa acggctcctg aagcgttttt
     2401 agcttcttct gctggtcaac cattgtcttt tgcatttctc gcgctctacg agcgttctgg
     2461 gcgcttacag cggcatttgc aaccgttccc gcatgacctt tgttgattgc atcggttaaa
     2521 cgagctgcta cagcttctgg ggtttcttcc tgacgactga aaagcccct
//
