LOCUS       NZ_CP130082             2569 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Schwarzengrund strain
            SEWLSH-25 plasmid unnamed5, complete sequence.
ACCESSION   NZ_CP130082
VERSION     NZ_CP130082.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35361205
            Assembly: GCF_030505755.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Schwarzengrund
  ORGANISM  Salmonella enterica subsp. enterica serovar Schwarzengrund
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Complete genome sequences of 17 Salmonella enterica serovar
            Schwarzengrund strains carrying IncFIB-IncFIC (IncFII) fusion
            plasmid
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) Office of Applied Research and Safety
            Assessment, CFSAN, U.S. Food and Drug Administration, 8301 Muirkirk
            Rd MOD1, Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hybrid assembly using Unicyler v. not specified
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 455.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 12:12:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,982
            CDSs (total)                      :: 4,860
            Genes (coding)                    :: 4,685
            CDSs (with protein)               :: 4,685
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 175
            CDSs (without protein)            :: 175
            Pseudo Genes (ambiguous residues) :: 0 of 175
            Pseudo Genes (frameshifted)       :: 93 of 175
            Pseudo Genes (incomplete)         :: 108 of 175
            Pseudo Genes (internal stop)      :: 32 of 175
            Pseudo Genes (multiple problems)  :: 51 of 175
            Pseudo Genes (short protein)      :: 1 of 175
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP130082.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Salmonella enterica subsp. enterica serovar
                     Schwarzengrund"
                     /mol_type="genomic DNA"
                     /strain="SEWLSH-25"
                     /serovar="Schwarzengrund"
                     /isolation_source="stool"
                     /sub_species="enterica"
                     /db_xref="taxon:340190"
                     /plasmid="unnamed5"
                     /geo_loc_name="USA"
                     /lat_lon="37.0902 N 95.7129 W"
                     /collection_date="2013"
                     /collected_by="Wisconsin State Laboratory of Hygiene"
     gene            886..1851
                     /gene="mobV"
                     /locus_tag="QPJ64_RS24905"
                     /old_locus_tag="QPJ64_24905"
     CDS             886..1851
                     /gene="mobV"
                     /locus_tag="QPJ64_RS24905"
                     /old_locus_tag="QPJ64_24905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010657476.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_052928736.1"
                     /translation="MAFAIMRAKKLNGMGAVAASLQHCYRDRDTPNADQTRTAENEHRA
                     ATSTDEAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWTKATSEQQADFFDQAHKWLAE
                     KYGADRIITATIHRDETSPHLSAFVVPLTADGRLSAKDFIGNRAKMTADQTSFAKAVQH
                     LGLERGIERSRATHTSIKQHYAAIEKGTKGEVTITPEAVQPRVLKKGLFSRQEETPEAV
                     AARLTDAINKGHAGTVANAAVSAQNARRAREMQKTMVDQQKKLKTLQEPFKGLSREQVA
                     EVIKMATTMQRENEAAKAAKLQRQKEQRQQRRSQDRGFSR"
                     /name="mobV"
     gene            complement(1853..2494)
                     /locus_tag="QPJ64_RS24910"
                     /old_locus_tag="QPJ64_24910"
     CDS             complement(1853..2494)
                     /locus_tag="QPJ64_RS24910"
                     /old_locus_tag="QPJ64_24910"
                     /inference="COORDINATES: protein motif:HMM:NF017542.2"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_052928735.1"
                     /translation="MNKQNIHISPEAQARVRQQELAEQDEAAKRAKKNYNFVQIEKRAL
                     RLVRELYEANPAAGKLLFILAEKMNRQNALVCSYDTMSKITGLGRTTLYKAVKYLKEHN
                     WVEVIKVGTANAYVINSRVFWQSHGDKKLTVFHATIVASSDEQDTPVEDWDKVKLNHFP
                     FLSHDDDVTVTNEQLPPPDQEELDFHKTPEPCFLDGDEPVEPPTHITLPK"
                     /name="replication/maintenance protein RepL"
     Typing          887..1461
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.75"
                     /coverage="98.0"
                     /evalue="1.01e-127"
ORIGIN
        1 gccaccaaag tgatatatgt tcactctagg ggtgaacata tatgttcgcc ctaggggtga
       61 acataaggaa acaggctcaa agccaataac gacaagggtt taagactgtt tttagtagtt
      121 gtcccctctc tatctcatag ggggcgttgc cccctgccgc acttcgtttg gctaaccccc
      181 ctgtcgcttc gctcctgaaa atgcctgccc tgcgggcaga aggcttttgt tacttgcagc
      241 ggcctacggc ctcgctctaa gggggcgttg ccccctagcg cgcttcgctt gcctccccca
      301 cgttcgccac gtggcagggg ggcaggacgg gcggcctacg gcctacttac ctgcccccca
      361 tgcctaagcg tgtggtcgtt ccagcagcgt caagggtacg gcttcgccca cgtactcacc
      421 cgttcggtgc tcgccttcgg ctgcgctccg cgtgcggctt ccgtgcgtgc ccttgacacc
      481 gcttccactc aaatggaacc gaacggaaag ggggtcaagg gaaccgtgga ataccgcagc
      541 cccaacgggg cgaggatatg ccgcgaaagt cccttgatgc ccttggagtg acccacgctc
      601 ccgtctgggg tttgggttgt gcaggccgaa ggccggaact gcccacaccc ctgacgacag
      661 agggcgactc gttcccccca gcggggggcg gaggggggag aatgcaacga gtgaaacgag
      721 gcgcagggcg atagcccgaa gagcaagccg caggcgctgc aacccgcttg cgggtcacga
      781 ttttacgaag taaagtctag tgagtactct ttgactccaa agaggcccgc cggaggcact
      841 gcgttttccg tcgggatggc accagcacag accgaggggg aacgcatggc ttttgcgatc
      901 atgagagcga aaaagctcaa cggcatgggg gctgtcgcgg cctcgttgca gcactgctac
      961 cgagaccgag acacgcccaa tgccgaccag acgcgaacgg cagaaaacga acacagagcc
     1021 gccacatcaa ccgatgaggc aatggggcgc ttgcgtgagt tgctgccaga gaagcggcgc
     1081 aaagatgcgg tgctggcggt tgagtacgtc atgacggcat cgcccgaatg gtggacgaaa
     1141 gccaccagcg aacagcaggc ggatttcttc gaccaggcac acaagtggct ggccgaaaaa
     1201 tacggcgctg accgcatcat cacggccacc attcaccgcg acgagaccag cccacaccta
     1261 agcgcgtttg tggtgccgtt gaccgctgac ggacgtttga gcgccaagga tttcattggc
     1321 aacagggcga aaatgacggc tgaccagacc agctttgcca aagctgtgca gcacctaggg
     1381 cttgaaaggg gcatcgagcg cagcagggca acgcatacca gcatcaagca gcattacgcc
     1441 gccatcgaaa agggcaccaa aggggaagtg accatcaccc ccgaagccgt ccagccaagg
     1501 gtgttgaaga aggggctttt cagtcgtcag gaagaaaccc cagaagctgt agcagctcgt
     1561 ttaaccgatg caatcaacaa aggtcatgcg ggaacggttg caaatgccgc tgtaagcgcc
     1621 cagaacgctc gtagagcgcg agaaatgcaa aagacaatgg ttgaccagca gaagaagcta
     1681 aaaacgcttc aggagccgtt taaggggctt tcacgcgaac aggtagcgga ggtcatcaag
     1741 atggccacaa ccatgcaacg ggaaaacgaa gcggccaagg ccgcgaagtt gcaacgccaa
     1801 aaggaacagc gacagcagcg acgcagccaa gacagggggt ttagcagata aatcacttgg
     1861 gcagcgtgat gtgagttggc ggctcgacgg gctcgtcacc gtctaagaaa cacggctctg
     1921 gtgtcttgtg aaagtccaat tcctcttggt ctggcggcgg tagctgctcg tttgtcacgg
     1981 tgacgtcatc gtcgtgactg aggaacggga aatggttcaa tttcaccttg tcccagtcct
     2041 ctacgggggt gtcttgttcg tcgcttgatg ccacgatagt agcgtggaag accgttagtt
     2101 ttttatcgcc gtgagactgc cagaacacgc gggaattgat gacataagcg ttagctgtac
     2161 ccaccttaat gacttcaacc caattgtgtt ctttgaggta tttcacggcc ttgtagagcg
     2221 ttgttctgcc tagtcctgtg atctttgaca tggtgtcata gctgcaaacc aaagcgtttt
     2281 gtctgttcat tttttcggcc agtatgaaca gcaatttgcc agctgctggg ttggcttcgt
     2341 acagctcacg aacaagccgc aaggctcgtt tttcaatctg cacgaagttg taattcttct
     2401 tcgctcgctt agctgcttcg tcttgttctg caagctcttg ttgccttaca cgggcttgcg
     2461 cctcggggct tatgtgtatg ttctgtttat tcatagcata cgttccattt gctgaatcaa
     2521 ttgttcacct ataggcacac aatacgttca cttttaatga acgtcaagt
//
