LOCUS       NZ_CP130075             2569 bp    DNA     circular CON 30-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Schwarzengrund strain
            SEWLSH-26 plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP130075
VERSION     NZ_CP130075.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35361206
            Assembly: GCF_030505735.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Schwarzengrund
  ORGANISM  Salmonella enterica subsp. enterica serovar Schwarzengrund
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Complete genome sequences of 17 Salmonella enterica serovar
            Schwarzengrund strains carrying IncFIB-IncFIC (IncFII) fusion
            plasmid
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Sopovski,D., Commichaux,S., Zhao,S., Grim,C.J., Foley,S.L. and
            Khajanchi,B.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2023) Office of Applied Research and Safety
            Assessment, CFSAN, U.S. Food and Drug Administration, 8301 Muirkirk
            Rd MOD1, Laurel, MD 20708, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: Hybrid assembly using Unicyler v. not specified
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 514.3x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/30/2023 11:54:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,954
            CDSs (total)                      :: 4,832
            Genes (coding)                    :: 4,671
            CDSs (with protein)               :: 4,671
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 80 of 161
            Pseudo Genes (incomplete)         :: 106 of 161
            Pseudo Genes (internal stop)      :: 30 of 161
            Pseudo Genes (multiple problems)  :: 49 of 161
            Pseudo Genes (short protein)      :: 1 of 161
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP130075.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Salmonella enterica subsp. enterica serovar
                     Schwarzengrund"
                     /mol_type="genomic DNA"
                     /strain="SEWLSH-26"
                     /serovar="Schwarzengrund"
                     /isolation_source="stool"
                     /sub_species="enterica"
                     /db_xref="taxon:340190"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA"
                     /lat_lon="37.0902 N 95.7129 W"
                     /collection_date="2013"
                     /collected_by="Wisconsin State Laboratory of Hygiene"
     gene            join(1703..2569,1..99)
                     /gene="mobV"
                     /locus_tag="QPJ65_RS24765"
                     /old_locus_tag="QPJ65_24765"
     CDS             join(1703..2569,1..99)
                     /gene="mobV"
                     /locus_tag="QPJ65_RS24765"
                     /old_locus_tag="QPJ65_24765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000024818.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_052928736.1"
                     /translation="MAFAIMRAKKLNGMGAVAASLQHCYRDRDTPNADQTRTAENEHRA
                     ATSTDEAMGRLRELLPEKRRKDAVLAVEYVMTASPEWWTKATSEQQADFFDQAHKWLAE
                     KYGADRIITATIHRDETSPHLSAFVVPLTADGRLSAKDFIGNRAKMTADQTSFAKAVQH
                     LGLERGIERSRATHTSIKQHYAAIEKGTKGEVTITPEAVQPRVLKKGLFSRQEETPEAV
                     AARLTDAINKGHAGTVANAAVSAQNARRAREMQKTMVDQQKKLKTLQEPFKGLSREQVA
                     EVIKMATTMQRENEAAKAAKLQRQKEQRQQRRSQDRGFSR"
                     /name="mobV"
     gene            complement(101..742)
                     /locus_tag="QPJ65_RS24770"
                     /old_locus_tag="QPJ65_24770"
     CDS             complement(101..742)
                     /locus_tag="QPJ65_RS24770"
                     /old_locus_tag="QPJ65_24770"
                     /inference="COORDINATES: protein motif:HMM:NF017542.2"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_052928735.1"
                     /translation="MNKQNIHISPEAQARVRQQELAEQDEAAKRAKKNYNFVQIEKRAL
                     RLVRELYEANPAAGKLLFILAEKMNRQNALVCSYDTMSKITGLGRTTLYKAVKYLKEHN
                     WVEVIKVGTANAYVINSRVFWQSHGDKKLTVFHATIVASSDEQDTPVEDWDKVKLNHFP
                     FLSHDDDVTVTNEQLPPPDQEELDFHKTPEPCFLDGDEPVEPPTHITLPK"
                     /name="replication/maintenance protein RepL"
     Typing          1704..2278
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.75"
                     /coverage="98.0"
                     /evalue="2.14e-127"
ORIGIN
        1 atgcaacggg aaaacgaagc ggccaaggcc gcgaagttgc aacgccaaaa ggaacagcga
       61 cagcagcgac gcagccaaga cagggggttt agcagataaa tcacttgggc agcgtgatgt
      121 gagttggcgg ctcgacgggc tcgtcaccgt ctaagaaaca cggctctggt gtcttgtgaa
      181 agtccaattc ctcttggtct ggcggcggta gctgctcgtt tgtcacggtg acgtcatcgt
      241 cgtgactgag gaacgggaaa tggttcaatt tcaccttgtc ccagtcctct acgggggtgt
      301 cttgttcgtc gcttgatgcc acgatagtag cgtggaagac cgttagtttt ttatcgccgt
      361 gagactgcca gaacacgcgg gaattgatga cataagcgtt agctgtaccc accttaatga
      421 cttcaaccca attgtgttct ttgaggtatt tcacggcctt gtagagcgtt gttctgccta
      481 gtcctgtgat ctttgacatg gtgtcatagc tgcaaaccaa agcgttttgt ctgttcattt
      541 tttcggccag tatgaacagc aatttgccag ctgctgggtt ggcttcgtac agctcacgaa
      601 caagccgcaa ggctcgtttt tcaatctgca cgaagttgta attcttcttc gctcgcttag
      661 ctgcttcgtc ttgttctgca agctcttgtt gccttacacg ggcttgcgcc tcggggctta
      721 tgtgtatgtt ctgtttattc atagcatacg ttccatttgc tgaatcaatt gttcacctat
      781 aggcacacaa tacgttcact tttaatgaac gtcaagtgcc accaaagtga tatatgttca
      841 ctctaggggt gaacatatat gttcgcccta ggggtgaaca taaggaaaca ggctcaaagc
      901 caataacgac aagggtttaa gactgttttt agtagttgtc ccctctctat ctcatagggg
      961 gcgttgcccc ctgccgcact tcgtttggct aacccccctg tcgcttcgct cctgaaaatg
     1021 cctgccctgc gggcagaagg cttttgttac ttgcagcggc ctacggcctc gctctaaggg
     1081 ggcgttgccc cctagcgcgc ttcgcttgcc tcccccacgt tcgccacgtg gcaggggggc
     1141 aggacgggcg gcctacggcc tacttacctg ccccccatgc ctaagcgtgt ggtcgttcca
     1201 gcagcgtcaa gggtacggct tcgcccacgt actcacccgt tcggtgctcg ccttcggctg
     1261 cgctccgcgt gcggcttccg tgcgtgccct tgacaccgct tccactcaaa tggaaccgaa
     1321 cggaaagggg gtcaagggaa ccgtggaata ccgcagcccc aacggggcga ggatatgccg
     1381 cgaaagtccc ttgatgccct tggagtgacc cacgctcccg tctggggttt gggttgtgca
     1441 ggccgaaggc cggaactgcc cacacccctg acgacagagg gcgactcgtt ccccccagcg
     1501 gggggcggag gggggagaat gcaacgagtg aaacgaggcg cagggcgata gcccgaagag
     1561 caagccgcag gcgctgcaac ccgcttgcgg gtcacgattt tacgaagtaa agtctagtga
     1621 gtactctttg actccaaaga ggcccgccgg aggcactgcg ttttccgtcg ggatggcacc
     1681 agcacagacc gagggggaac gcatggcttt tgcgatcatg agagcgaaaa agctcaacgg
     1741 catgggggct gtcgcggcct cgttgcagca ctgctaccga gaccgagaca cgcccaatgc
     1801 cgaccagacg cgaacggcag aaaacgaaca cagagccgcc acatcaaccg atgaggcaat
     1861 ggggcgcttg cgtgagttgc tgccagagaa gcggcgcaaa gatgcggtgc tggcggttga
     1921 gtacgtcatg acggcatcgc ccgaatggtg gacgaaagcc accagcgaac agcaggcgga
     1981 tttcttcgac caggcacaca agtggctggc cgaaaaatac ggcgctgacc gcatcatcac
     2041 ggccaccatt caccgcgacg agaccagccc acacctaagc gcgtttgtgg tgccgttgac
     2101 cgctgacgga cgtttgagcg ccaaggattt cattggcaac agggcgaaaa tgacggctga
     2161 ccagaccagc tttgccaaag ctgtgcagca cctagggctt gaaaggggca tcgagcgcag
     2221 cagggcaacg cataccagca tcaagcagca ttacgccgcc atcgaaaagg gcaccaaagg
     2281 ggaagtgacc atcacccccg aagccgtcca gccaagggtg ttgaagaagg ggcttttcag
     2341 tcgtcaggaa gaaaccccag aagctgtagc agctcgttta accgatgcaa tcaacaaagg
     2401 tcatgcggga acggttgcaa atgccgctgt aagcgcccag aacgctcgta gagcgcgaga
     2461 aatgcaaaag acaatggttg accagcagaa gaagctaaaa acgcttcagg agccgtttaa
     2521 ggggctttca cgcgaacagg tagcggaggt catcaagatg gccacaacc
//
