LOCUS       NZ_CP129361             1442 bp    DNA     circular CON 19-JUL-2023
DEFINITION  Staphylococcus aureus strain CKMM-401M plasmid pCKMM-401, complete
            sequence.
ACCESSION   NZ_CP129361
VERSION     NZ_CP129361.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36269246
            Assembly: GCF_030435875.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1442)
  AUTHORS   Lee,G.Y. and Yang,S.-J.
  TITLE     Genome sequence of a SCCmec V carrying S. aureus isolate recovered
            from a chicken meat
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1442)
  AUTHORS   Lee,G.Y. and Yang,S.-J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUL-2023) Department of veterinary microbiology, Seoul
            National University, 1, Gwanak-ro, Gwanak-gu, Seoul 08826, South
            Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Prokka v. v1.14.6
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 417.0x
            Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/14/2023 15:38:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,972
            CDSs (total)                      :: 2,891
            Genes (coding)                    :: 2,778
            CDSs (with protein)               :: 2,778
            Genes (RNA)                       :: 81
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 58
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 47 of 113
            Pseudo Genes (incomplete)         :: 52 of 113
            Pseudo Genes (internal stop)      :: 33 of 113
            Pseudo Genes (multiple problems)  :: 19 of 113
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP129361.1.
            Bacteria and source DNA available from Seoul National University.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1442
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="CKMM-401M"
                     /isolation_source="Chicken meats"
                     /db_xref="taxon:1280"
                     /plasmid="pCKMM-401"
                     /geo_loc_name="South Korea: Gyeongsang"
                     /lat_lon="35.5 N 127 E"
                     /collection_date="2019-04-08"
                     /collected_by="Chung-Ang University"
     gene            complement(join(900..1442,1..354))
                     /locus_tag="QYE86_RS14860"
     CDS             complement(join(900..1442,1..354))
                     /locus_tag="QYE86_RS14860"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000532202.1"
                     /translation="MGRDKMIYLEDEKTVLDFHKNLTGGKLVVYLTYDQLNAQNLPLSD
                     SYDLKVKRYNNGVYKVCWYKNLRKKSNTNPYQKFNLEKRLKMSKEELEKLEEEQRRSHI
                     FEVKNLIKDYVLSNHFDMFWTLTFDPKKYDGEVSDELAYDLMRKWLHKMRNTHKRKSDE
                     PFNYIAIPERHKSGQIHWHMLTGYIEPNLIDSGKTFRNQKVYNCMDWKHGFTNVQKMRS
                     KSKVSSYMTKYITKDLLYSPVRKHKRKYWCSKGLALPEVYAGNYSEVADVLPLYDENGQ
                     LNPTHSNDVCDIWLFKV"
                     /name="hypothetical protein"
ORIGIN
        1 attagacaat acatagtcct taattaaatt ttttacttca aaaatatgac ttcttcgttg
       61 ttcttcctct aatttttcca gctcttcttt agacattttt aagcgttttt cgaggttaaa
      121 tttttggtag ggattagtgt tagatttttt gcgtaaattt ttgtaccaac aaactttata
      181 aacgccgttg ttataacgtt taaccttcaa atcataagag tcagaaaggg gtaaattttg
      241 tgcgttaagt tggtcgtatg tcaagtagac gaccaacttc cctcccgtca aatttttgtg
      301 gaaatccaaa acagtttttt cgtcttccaa ataaatcatt ttatctcgac ccataataaa
      361 aaatctcctt tccaatcact gaaaaagagt cacaacactt ccaaatttat caacttgatt
      421 ttacaaaccg aatacagtaa catacaagtt aacaaaagta ctcgttacaa cacaatcttt
      481 ggtcggaggg tgctgtaact cttttttatt tattttagct atataatagc attaagagcg
      541 tgtacggtct aatacagact gcgcacgccc ttttttattt attccaattt ccttttggac
      601 atggaacctt taggctatat gtattgctgt tggtgcttgc ttggtctaat ccccattcaa
      661 tcactcacca acatttacag ctagctgtaa taacatatag ccattttcca tatcaaaagt
      721 tttctcggca taaacaatca acacaaagag cttatgcaac gcttaggaag caaatataaa
      781 cagtcaggca tataaatata tatttatata taaatataaa cgctatcgcg cgtatatgtg
      841 cttgctaaac gttccactag cgcatggact ccgtcagcgc ctcgcaagca catatacgtt
      901 tacactttga ataaccaaat atcacaaaca tcattgctat gcgtcgggtt taactgccca
      961 ttttcatcgt atagcggcaa aacatcagct acttcagaat aattgcctgc atacacctcg
     1021 ggcaatgcta agcccttgct acaccaatac ttacgcttat gctttctaac aggactatat
     1081 agtaaatctt tcgtgatgta tttagtcata tagctactca cttttgattt cgaccgcatt
     1141 ttttgaacgt tcgtaaatcc atgcttccag tccatgcaat tatatacttt ctgatttcta
     1201 aacgtcttgc cactatcaat caaattcggc tcaatgtaac cagtcaacat atgccagtga
     1261 atttggccac ttttatgacg ctctggtatc gctatataat taaacggctc atcactttta
     1321 cgcttatgag tatttctcat tttatgaagc cacttacgca tcaaatcata agctaattca
     1381 tcactaacct caccgtcata tttttttgga tcaaacgtca acgtccaaaa catatcaaag
     1441 tg
//
