LOCUS       NZ_CP129249             2114 bp    DNA     circular CON 13-JUL-2023
DEFINITION  Acinetobacter baumannii strain 13A297n plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP129249
VERSION     NZ_CP129249.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN36085765
            Assembly: GCF_030413705.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Bour,M. and Potron,A.
  TITLE     Complete genome of blaNDM-9 producing Acinetobacter baumannii
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Bour,M. and Potron,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2023) French National Reference Center for
            Antibiotics Resistance, University Hospital of Besancon, 3 boulevard
            Alexandre Fleming, Besancon 25000, France
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Spades and Trycycler v. 0.5.0
            Assembly Name                     :: de novo
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 280.0x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/13/2023 01:50:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,038
            CDSs (total)                      :: 3,942
            Genes (coding)                    :: 3,781
            CDSs (with protein)               :: 3,781
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 161
            CDSs (without protein)            :: 161
            Pseudo Genes (ambiguous residues) :: 0 of 161
            Pseudo Genes (frameshifted)       :: 116 of 161
            Pseudo Genes (incomplete)         :: 40 of 161
            Pseudo Genes (internal stop)      :: 21 of 161
            Pseudo Genes (multiple problems)  :: 14 of 161
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP129249.1.
            Bacteria and source DNA available from French NRC.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="13A297n"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="unnamed3"
                     /geo_loc_name="France: Nancy"
                     /lat_lon="48.64 N 6.15 E"
                     /collection_date="2013"
                     /collected_by="French National Reference Center for
                     Antibiotics Resistance"
     gene            complement(334..579)
                     /locus_tag="QWY26_RS20185"
                     /old_locus_tag="QWY26_20185"
     CDS             complement(334..579)
                     /locus_tag="QWY26_RS20185"
                     /old_locus_tag="QWY26_20185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003115283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_003115283.1"
                     /translation="MLIEKVILVSVEKSKQGYTAEVELETADGFSFSGPIEFDVNWNYD
                     LGFLNTFVNTDEDRIFIKEVLSSDDFKNDVLSSIVS"
                     /name="hypothetical protein"
     gene            complement(569..1750)
                     /locus_tag="QWY26_RS20190"
                     /old_locus_tag="QWY26_20190"
     CDS             complement(569..1750)
                     /locus_tag="QWY26_RS20190"
                     /old_locus_tag="QWY26_20190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003115284.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_003115284.1"
                     /translation="MNLFYGENPSSASSKSIQNSQSLGIYTKSPAILTPQGFQRVHDYL
                     LQDQSRKLLPKERVSNCRRLRIDKMKPRTVMYNENRCKAHFGNVQICGSIWSCPICAKH
                     ITEQRRTELRTGLDRWKTGRNGSVYLLTLTFSHSHGQSLRILLEGQKKAYKRFFEGRKV
                     VAIFKKLGVEYKIKGQEVTYGQNGWHPHNHVLLLATHHDLRFESYISELAEQWISACIK
                     SGLNAPSMQHGLDLRNGYYADQYVAKWGIENELTKGHIKKGRNGSYTPFDLLQLSTSDE
                     IVHGRSSGKLFQEFALAMKGARQLVWARGLKALLEIEDKSDEELAEETDKTSITLTPVE
                     DLVFSLLCTYQKRHEYLEAITRDYENGCFGNGEAENLINDLVQTEIRRLENAY"
                     /name="protein rep"
ORIGIN
        1 atcaaacatg atcatctgta tttagtaaaa atcaattttc ttgttttcag cgagcgtagc
       61 tcggttactc ccgttcttag gctaaaggga gcatgtaatc agggagagaa ggctcttaat
      121 cgatttatgt cagttcgcgg gtagacaccc gctctgtctt ttcattttca ggctgaaaat
      181 ggatataaaa caatttactc catgccgtta tgtgcgtgca cggcacgcca aacgtcatgg
      241 agtaaattga tatgcaccag tggtgcatga ttagcctaag ttgatttttt gcgtatacgc
      301 aaaaaaaagc ccgaggggat cgggctaaaa aatttaagaa acaatagaac ttaagacatc
      361 gttcttaaaa tcatcactgg aaagaacttc cttaataaat attcgatctt catctgtatt
      421 gacgaaggta ttcaaaaaac ccaagtcgta gttccaatta acatcaaatt caatcggccc
      481 ggaaaaggaa aaaccatctg ctgtttctag ttcaacttca gccgtataac cttgtttaga
      541 cttctcaaca ctcaccaaaa ttactttctc aataagcatt ttctaatctc ctaatttctg
      601 tttgaaccaa atcgtttatt aaattttctg cttcaccatt tccaaaacat ccattttcat
      661 aatctcgagt aattgcctcc agatattcat gacgtttttg gtatgtgcaa agcagactaa
      721 agacgagatc ctcaacaggg gttaaagtga ttgaagtctt gtctgtttct tcagctaact
      781 cttcatcaga tttatcttca atttcaagca aagccttaag accacgtgcc caaacaagtt
      841 gtctagcacc tttcatagcc agggcaaatt cttgaaaaag tttgcctgaa gatcgtccat
      901 gaacaatttc atcagaagta gataattgca aaagatcaaa tggcgtataa ctgccattgc
      961 gacccttctt aatgtgaccc ttagttaatt cattctcaat tccccacttt gcaacatatt
     1021 ggtcagcgta atatccgtta cggagatcca aaccatgctg catcgaagga gcattaagac
     1081 ctgatttaat acaagctgaa atccattgtt cagctaactc agagatataa ctctcaaaac
     1141 gtaaatcgtg gtgagttgcc aataaaagaa catgattatg aggatgccaa ccattttggc
     1201 cgtaagtaac ttcctggccc ttaattttgt attcgacacc tagttttttg aaaattgcta
     1261 caactttgcg cccctcgaaa aatcgcttgt aagccttttt ctggccttct agcaaaatcc
     1321 ttaaggattg accatgcgaa tggctaaatg tgagcgtaag gagatatacg gagccgttac
     1381 ggcctgtttt ccacctatcc aagccagttc ttaattcagt acgtctttgc tccgtgatgt
     1441 gctttgcaca aataggacat gaccaaatcg aaccgcaaat ctgaacattg ccaaaatgag
     1501 ccttacaacg attctcgtta tacatcactg tacgaggctt cattttatca atgcgcaaac
     1561 gtctacaatt cgaaactcgc tctttgggta aaagctttcg agattgatcc tggagtaaat
     1621 aatcatgtac ccgctgaaac ccttgtggcg taaggatggc aggagatttc gtatatatac
     1681 caagagactg gctattttga atgctctttg agcttgctga ggacggattt tccccataaa
     1741 atagattcat cgacatacct taattatgtt gatcactggg ttgaagtgtt ccagcactgt
     1801 cagcccattt tttttgcctg tacggtgaac aaggtctttc gcacaagctt tagtgcaagt
     1861 tgatagtact actgaaaaaa tcagaaaagc aagaccacaa gttttcatga caacatgttg
     1921 tatatacgca aaatataagt ggtaaataca atgctccgcc aattcctcgg tcgtgtcggt
     1981 cgtgcgtgcc ctcctcctca ctcctcgtct ttgctccgca ttattttcaa taagtttaaa
     2041 tatcattttt tgtagtaccc cagaattgtg taaaccgttg ttaaaacaaa aagaattaaa
     2101 ttaattagat cgta
//
