LOCUS       NZ_CP129244             2165 bp    DNA     circular CON 13-JUL-2023
DEFINITION  Escherichia coli strain 1344_LBHALD plasmid p4_LBHALD, complete
            sequence.
ACCESSION   NZ_CP129244
VERSION     NZ_CP129244.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35984967
            Assembly: GCF_030413845.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   DOSSOUVI,K.M., SAMBE-BA,B. and CAMARA,M.
  TITLE     Genomics of Clinical Carbapenem-Resistant Enterobacteriaceae
            Isolated in a Tertiary Care Hospital in Dakar Senegal
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   DOSSOUVI,K.M., SAMBE-BA,B. and CAMARA,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2023) Bacteriology laboratory, National University
            Teaching Hospital Aristide le Dantec, 30, Avenue Pasteur, Dakar,
            Dakar 7325, Senegal
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 15-FEB-2023
            Assembly Method                   :: SPAdes v. 3.15.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 70.0x
            Sequencing Technology             :: Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/13/2023 02:26:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,092
            CDSs (total)                      :: 4,984
            Genes (coding)                    :: 4,570
            CDSs (with protein)               :: 4,570
            Genes (RNA)                       :: 108
            rRNAs                             :: 5, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 414
            CDSs (without protein)            :: 414
            Pseudo Genes (ambiguous residues) :: 0 of 414
            Pseudo Genes (frameshifted)       :: 84 of 414
            Pseudo Genes (incomplete)         :: 333 of 414
            Pseudo Genes (internal stop)      :: 45 of 414
            Pseudo Genes (multiple problems)  :: 45 of 414
            Pseudo Genes (short protein)      :: 4 of 414
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP129244.1.
            Bacteria and source DNA available from Bacteriology laboratory of
            Aristide le Dantec University Teaching Hospital Dakar Senegal.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="1344_LBHALD"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p4_LBHALD"
                     /geo_loc_name="Senegal: Dakar"
                     /lat_lon="14.709 N 17.455 W"
                     /collection_date="2018-01-20"
                     /collected_by="Bacteriology laboratory of Aristide Le
                     Dantec National University teaching hospital in Dakar
                     Senegal"
     gene            287..1252
                     /locus_tag="QU831_RS25455"
                     /old_locus_tag="QU831_25455"
     CDS             287..1252
                     /locus_tag="QU831_RS25455"
                     /old_locus_tag="QU831_25455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_301001584.1"
                     /translation="MSEDKFLSDYSPRDAVWDTQRTLTDSVGGIYQTAAEFERYALRMA
                     SCSGLLRFGWSTIMETGETRLRLRSAQFCRVRHCPVCQWRRTLMWQARFYQALPKIVVD
                     YPSSRWLFLTLTVRNCEIGELGTVLTAMNAAFKRMEKRKELSPVQGWIRATEVTRGKDG
                     SAHPHFHCLLMVQPSWFKGKNYVKHERWVELWRDCLRVNYEPNIDIRAVKTKTGEVVAN
                     VAEQLQSAVAETLKYSVKPEDMANDPEWFLELTRQLHKRRFISTGGALKNVLQLDRETI
                     EDLAIADDVGDGTDDGKRTAFVWDSGKRRYKRAPEKDKSD"
                     /name="protein rep"
     gene            1256..1522
                     /locus_tag="QU831_RS25460"
                     /old_locus_tag="QU831_25460"
     CDS             1256..1522
                     /locus_tag="QU831_RS25460"
                     /old_locus_tag="QU831_25460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001024536.1"
                     /translation="MNINIEYLNGNKTIGLFFLRSEAVIPDRFKNLILLIDGLSFGTFG
                     FHPHEGFEDELILYIQKTNERVKTLFVKIDLNGIKFGFLRTHS"
                     /name="hypothetical protein"
     Typing          681..912
                     /name="Col(BS512)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.05e-118"
ORIGIN
        1 tctcgcgcgt gatccttgta tttatactta agggataaat ggcgggtatg aaatagtggt
       61 ttagcccagt aatgacgagg ctttgagtgg gttttgacag gtcaaagaaa atggagcaga
      121 attgaggcgt ttttaatcgg cgttggggag tgcgtcaaca ctccccaaca tttcgaatgt
      181 gtcacctcag cggcaaactc tggtgacatg tactggctcg caatgcacag gtacgtgatg
      241 aatataccac atcaaatcac agcctgccca gatcggagca ggcttaatgt cagaagataa
      301 attcctttcg gactacagcc cccgtgatgc agtttgggat acccagcgca cgcttaccga
      361 ttctgtcggg ggtatctacc agactgctgc tgaattcgag cgctatgcac tccgtatggc
      421 ctcctgtagc ggtttgttac gttttggttg gtctaccatc atggaaaccg gagaaacgcg
      481 cctacggctt cgtagtgcgc aattttgccg tgtccgtcat tgccctgtct gccagtggag
      541 aagaaccctc atgtggcaag cccgttttta tcaggctcta ccgaaaatcg ttgtggatta
      601 cccgtcttcc cgatggttgt ttctgacgtt aactgtcagg aactgcgaga taggtgaact
      661 tggaacagtc cttacagcaa tgaatgcggc gtttaagcga atggaaaagc gaaaggagct
      721 atcacctgtt caggggtgga tcagggctac ggaggtgacg cgaggtaagg atggcagcgc
      781 acatccgcat tttcactgtc tgctgatggt gcaaccttct tggtttaaag ggaagaacta
      841 cgttaagcac gaacgttggg tagaactctg gcgcgattgc ttgcgggtga actatgagcc
      901 gaatatcgat attcgggcag taaaaactaa gacaggtgag gttgtggcca acgttgccga
      961 gcaactgcaa agcgcggttg ctgaaacgct gaaatactcc gttaaaccgg aagatatggc
     1021 aaacgatcct gagtggtttc ttgagctgac gcggcagctt cacaagcgcc gttttatctc
     1081 gaccggtgga gcgctaaaaa acgtcctcca gttggatcga gaaaccattg aggatcttgc
     1141 cattgccgac gatgtagggg atggcactga tgacgggaag cggacggcgt ttgtctggga
     1201 ttcaggtaaa cggcgttaca aacgcgcccc tgagaaggat aaatcggatt aacgtatgaa
     1261 tattaatatt gaatacctga atggaaataa gactattggt ttattttttt taagaagtga
     1321 agcggtgatt cctgacaggt ttaaaaacct tattttgctt attgatggat taagttttgg
     1381 cacatttggt tttcatccgc acgaaggttt tgaggatgaa ttaattttat atattcagaa
     1441 aacaaacgag agggtaaaaa ctctttttgt gaaaatagat ttaaacggta tcaagtttgg
     1501 atttttaaga acgcattctt agttctggaa aagagccagc ggcaggctga ggtgataggt
     1561 acgagattgc atgcaatctc tagtgctctg tctatcctgc attatcctca gcattatcct
     1621 cagccttgcc aactcgacac caatgcagga tagacaatcc gatgtcaaat gttaacactc
     1681 tgcgagtggt acattttccc cggattatcg tcctgagcct gccgctggct ctctttctac
     1741 cgcctcgctt tgctcgttgc tcaacgcctc acagacacgg attaaaatcc gcatccgttc
     1801 accgtttttt aaagtccgtt aaaagcatga tgccatctcc gagagttaat ctcgtcaaat
     1861 gctaaatcgt gggggtcccc tttggggttc cgatttagtg attgacgaca ccaccgatta
     1921 aaaaacttat gcggggtgga tggtttcacg aagtgaggcc atccacctgt aagacagggt
     1981 tttgttttta tcccctgttt tggtgatcgg gtgtgtggaa aaggttgggg taagccgttc
     2041 ggggtgcttg ttttgggggg ttaaaattgt ggttattttt tgcgcaattc tcgcgcgtga
     2101 tccttgtatt tatacttaag ggataaatgg cgggtatgaa atagtggttt agcccagtaa
     2161 tgacg
//
