LOCUS       NZ_CP129205             3056 bp    DNA     circular CON 14-JUL-2023
DEFINITION  Klebsiella pneumoniae strain HMKP141603t plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP129205
VERSION     NZ_CP129205.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35786900
            Assembly: GCF_030414235.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3056)
  AUTHORS   Pan,S., Yue,C., Ma,H., Jiang,A., Li,J., Yang,Y., Yang,J., Ding,A.
            and Zeng,W.
  TITLE     Klebsiella pneumoniae HMKP141603, complete genome
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3056)
  AUTHORS   Pan,S., Yue,C., Ma,H., Jiang,A., Li,J., Yang,Y., Yang,J., Ding,A.
            and Zeng,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JUN-2023) School of Medicine, Kunming University, No.
            2 Puxin Road, Guandu District, Kunming, Yunnan 650200, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 21-JUN-2022
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/13/2023 09:57:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,244
            CDSs (total)                      :: 5,119
            Genes (coding)                    :: 4,997
            CDSs (with protein)               :: 4,997
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 122
            CDSs (without protein)            :: 122
            Pseudo Genes (ambiguous residues) :: 0 of 122
            Pseudo Genes (frameshifted)       :: 61 of 122
            Pseudo Genes (incomplete)         :: 67 of 122
            Pseudo Genes (internal stop)      :: 24 of 122
            Pseudo Genes (multiple problems)  :: 29 of 122
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP129205.1.
            Bacteria and source DNA available from Dr. Zeng Weikun is in charge
            of the laboratory in Kunming, Yunnan.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3056
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="HMKP141603t"
                     /isolation_source="clinically infected patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="unnamed3"
                     /geo_loc_name="China: Kunming, Yunnan"
                     /lat_lon="24.52 N 102.42 E"
                     /collection_date="2014"
                     /collected_by="School of Medicine, Kunming University"
     gene            complement(800..991)
                     /locus_tag="QTL73_RS26210"
                     /old_locus_tag="QTL73_26210"
     CDS             complement(800..991)
                     /locus_tag="QTL73_RS26210"
                     /old_locus_tag="QTL73_26210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041614.1"
                     /translation="MNKQQKTAVNMAKFIQDQSLLLLDRLNELDLDHEADFCEKLHEDA
                     ERLYRSLSARLNEQQDGA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1353..1988)
                     /locus_tag="QTL73_RS26215"
                     /old_locus_tag="QTL73_26215"
     CDS             complement(1353..1988)
                     /locus_tag="QTL73_RS26215"
                     /old_locus_tag="QTL73_26215"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_135726274.1"
                     /translation="MKNWLIPLIAWIVIFMGLKLILGGGCNDGWGSSSIGRMGACSHHG
                     GVNHTPGFIAFFISTAIAAYLFFKIDEMDTRKIKNAHSIQASYFEMESTSAPFNPCYSL
                     RLSSKEINFTHSFSWDGDKTVINIPSSPEELKYILSLSEKIKKDIENFREENTTFGCDG
                     ESVSIKTFNGFQEMSFVTPMLFISFESISPATLEMMTYLRNRLGFDLH"
                     /name="hypothetical protein"
     gene            complement(1991..2875)
                     /locus_tag="QTL73_RS26220"
                     /old_locus_tag="QTL73_26220"
     CDS             complement(1991..2875)
                     /locus_tag="QTL73_RS26220"
                     /old_locus_tag="QTL73_26220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001517860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_117259896.1"
                     /translation="MSNAALNLFNERLPHKPYFSDDLHFGVRIADKERAILAKYIQFNQ
                     PHAMFWLGFDVDRAGAAIDWSDRNAPAPTLTITNPENGHAHLLYALKTSIRTAPDGKMK
                     PLRYAAAVENALRKKLEADTGYSGLICKNPNHSHWKIAVWQPELYTLDWLADYLDLTTA
                     NDKEIVADYGLGRNCTLFDKTRRWAYRAIRQGWPEYDQWLQACYERASAYNLQFALPLD
                     ENEVMGIAKSIAKWTECKFSKDLFLEYVKNTHSSEIQSKRGKMSKGGGRKSLGEPWVEL
                     GVSRATYFRHRKK"
                     /name="replication initiation protein"
ORIGIN
        1 ttaccataac atccgttgcg tgcaccgcct cagagcctct gagagcgttt ctgaggcctc
       61 cggcctgaaa cacacacctt tctgtgccca tatcgagaaa aaacgcccct gatgattctg
      121 gcgcgactgc atggctatgc acggacatac ctggccggga ttttagcggc taaaatccga
      181 tgaacgccct gaaagccacc acgaaccacc ccgataacgg tgaacggatg cgcaatttat
      241 tgcgtggccg tgaggcgttg ccggcacagc cggaaaaacc attttcagca cgtgcaggag
      301 gcccaggaag agggggcgga tgtacgaata gttcagaggt cagatctgac gtaaaaatga
      361 tgtaaaagtg atgtactttt gatgtaattc tgttgtacac ccgcgatctg acgtaaaagt
      421 gatgtaattt tgatgtactt ttgatgtaat tctgttgtac acccgcgttc tggggtaaaa
      481 gcagatgcaa ttttgtagtt tatgtgtagt cgctgaaccc atagggtcat acgagcatga
      541 ccctttcccg gaaaaggacg ctttttagcc agaatcatcc ttaacctgcg gcgccagcac
      601 tcgggagtgg tcgttttata tactaaaaaa tgacatacac ctaacgcagc tgcgattttc
      661 atcgcaactt catgaaaaat aaataaaaaa gaaaaaataa agggattctg ggtattaccg
      721 gggtaataat attaagcgcc aaaacaatga aaattaaggc gatgccggta ttactccggt
      781 aatacccaca acggagccat tacgcaccgt cctgctgctc attcaggcgc gctgacaggc
      841 ttcggtaaag gcgttccgca tcctcatgga gtttctcgca gaaatcagcc tcatgatcca
      901 gatccagctc attaagcctg tccagaagaa gcagggactg atcctggatg aatttagcca
      961 tgttaacggc tgtcttttgt tgtttgttca tgaaggcccc ggcgcgaaag tgcttactgt
     1021 acgttctgat tgttttccgc ttcctcgctc attcgctcac tccgttcggt catgagactg
     1081 cggcgagcgt taccggctaa tcacggtgag aatattcgca gtgaatgtgg gaataattcg
     1141 caaaagattc gcaccattct cacgggggtt tcgggggatg caatcccctg aaccagtcac
     1201 ggtggaccct cgccagaggg gacgccgtgt gtactggctg aagataggtg cagtatgtca
     1261 gattctatgc tggcggcaaa aaaacagccc tcttctagag agggctgtta tctgatatag
     1321 gttgtttagt ctcactaaag ctaagatgac cttcaatgaa ggtcaaaacc taacctattc
     1381 cttaggtaag tcatcatttc aagcgttgcg ggagatatac tttcaaagct aatgaatagc
     1441 attggggtaa caaagctcat ctcttggaag ccattaaaag ttttaatgga cactgactcc
     1501 ccgtcacatc caaaagtagt gttttcttct ctaaaatttt caatgtcttt ttttattttc
     1561 tctgataaag agagaatgta ttttaactcc tcgggggagg atgggatatt aataacagtc
     1621 ttgtcaccat cccaactaaa actgtgagtg aaattgattt cctttgaact taaccttaac
     1681 gaatagcaag gattgaaagg agcgctagta gactccattt caaaataact tgcttgaatg
     1741 ctatgggcgt tttttatttt ccttgtatcc atttcatcta ttttaaaaaa aagataggcg
     1801 gcaatggccg tggaaatgaa aaaagcaatg aagcctgggg tatggttaac accgccatga
     1861 tgagagcagg cccccatcct tcctattgag gacgaacccc atccatcatt gcacccgcca
     1921 cctaaaatta actttaaccc cataaaaata acaatccatg caataagtgg gataagccag
     1981 tttttcaatc tcattttttc cgatgcctaa agtaagtagc tctactcaca cctaattcaa
     2041 cccacggttc gccaagagac tttctacctc cacctttact cattttgcct ctttttgatt
     2101 gtatttctga agaatgcgta ttttttacgt attccaaaaa caaatctttg ctgaatttac
     2161 actcagtcca tttagcaatg ctttttgcta ttcccataac ctcattttca tccagaggta
     2221 atgcaaactg caggttgtaa gcgctggcac gttcatagca ggcttgcagc cactggtcat
     2281 attcaggcca gccctgacga atagctcggt atgcccatcg gcgggtttta tcgaacaaag
     2341 tgcagttacg gcctaagccg taatcagcaa cgatttcttt atcgttcgcg gtggtcaagt
     2401 cgagatagtc agctagccag tccagtgtgt acagttctgg ctgccacacg gcaattttcc
     2461 aatggctatg gttcgggttt ttgcagatta gtcctgaata acccgtatcg gcctctaatt
     2521 ttttacgtag cgcgttctct acagcggcgg cgtagcgcag cggcttcatt tttccgtctg
     2581 gcgcagtacg gatcgaagtt ttcagcgcat agagcaggtg cgcgtgtccg ttttcgggat
     2641 tggtgatggt cagcgtgggc gcgggcgcgt tgcggtcgct ccagtctatg gcggcaccgg
     2701 cgcgatcgac atcgaatccc agccagaaca tggcatgagg ctgattgaac tgaatgtatt
     2761 tcgccaagat ggcgcgttcc ttatcggcaa tgcgtacacc aaagtgcaga tcgtccgaaa
     2821 agtacggctt gtgcggcaag cgctcgttga aaagattaag tgcagcgtta ctcaatgcgc
     2881 cctgcgctta tggcgggctg ttgtctggca cggttcatgt gctaagattc cttcaaggtt
     2941 tcgacctagc cctggttatc atgcgatccg ccaagatatg acatgatttc cggggctttg
     3001 ttttttctgg ctctaacgtt acaccgtccg gtaacgtctg tcgatcccac aacgat
//
