LOCUS       NZ_CP128622             3336 bp    DNA     circular CON 05-JUL-2023
DEFINITION  Enterobacter roggenkampii strain WL374 plasmid pWL374-4, complete
            sequence.
ACCESSION   NZ_CP128622
VERSION     NZ_CP128622.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35977203
            Assembly: GCF_030384865.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Jiang,T.
  TITLE     Complete genome sequence of a carbapenem resistant Enterobacter
            roggenkampii isolate WL374
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Jiang,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-JUN-2023) Department of Clinical Laboratory, The
            Affiliated Wenling Hospital, Chengxi, Wenling 317500, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/04/2023 08:17:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,950
            CDSs (total)                      :: 4,829
            Genes (coding)                    :: 4,750
            CDSs (with protein)               :: 4,750
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 27 of 79
            Pseudo Genes (incomplete)         :: 53 of 79
            Pseudo Genes (internal stop)      :: 12 of 79
            Pseudo Genes (multiple problems)  :: 12 of 79
            Pseudo Genes (short protein)      :: 1 of 79
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP128622.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="WL374"
                     /host="Homo sapiens"
                     /db_xref="taxon:1812935"
                     /plasmid="pWL374-4"
                     /geo_loc_name="China: Wenling"
                     /collection_date="2021"
                     /collected_by="JT"
     gene            join(3285..3336,1..80)
                     /locus_tag="QU521_RS24735"
                     /old_locus_tag="QU521_24735"
     CDS             join(3285..3336,1..80)
                     /locus_tag="QU521_RS24735"
                     /old_locus_tag="QU521_24735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001354639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023224512.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHDKAPLAAATGNRISRAS"
                     /name="hypothetical protein"
     gene            600..1535
                     /locus_tag="QU521_RS24740"
                     /old_locus_tag="QU521_24740"
     CDS             600..1535
                     /locus_tag="QU521_RS24740"
                     /old_locus_tag="QU521_24740"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_171878940.1"
                     /translation="MTAQDVINVLTILKANDSTSFSKIQRALKMSISQLEGIIDGLTAM
                     GIVYKSSFTSYSLTELTSKPVVSDGVRKAFEDIITNRGTYLSEELLQKVSTPFIPLMTH
                     EYKNAPVKVMIVGQETLGMEDAFSTIVSVDDYINESIESFNKFNFGEDLRNSHFWYAFD
                     EVVKYFNLPSRRHAYWTNLHKFQLIENDGDSVSISKLPSKDIMTMIHMQRELFLAEIKD
                     TKPDIIIYFTGGQTWVLDHYLNNGKKLAVKAIDERSHLGIIQTEFLHCPIAICTDHPAR
                     RGYTQAIVDHRANLLKYAADKFYASESARV"
                     /name="hypothetical protein"
     gene            <1565..1668
                     /locus_tag="QU521_RS24745"
                     /old_locus_tag="QU521_24745"
                     /pseudo=""
     CDS             <1565..1668
                     /locus_tag="QU521_RS24745"
                     /old_locus_tag="QU521_24745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558297.1"
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA]"
                     /note="frameshifted; incomplete; partial in the middle of a
                     contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /name="IS3 family transposase"
     gene            complement(1728..2186)
                     /locus_tag="QU521_RS24750"
                     /old_locus_tag="QU521_24750"
     CDS             complement(1728..2186)
                     /locus_tag="QU521_RS24750"
                     /old_locus_tag="QU521_24750"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_171878937.1"
                     /translation="MTKKSVPHCIVHACMNGLFFLTTELHRSFSSYITFTTLLHHLYIT
                     FTSFLQLIRHFHPLCHLYITPFLNVLTAGFPAAPATLHGHAINCVPVHRFRMGRTPETG
                     LPLAEWCEFPRYALARILMHAVKTEPARFWRVFGWFVACFTGFPSETP"
                     /name="hypothetical protein"
     Typing          4..110
                     /name="rep_cluster_2405"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="81.818"
                     /coverage="94.0"
                     /evalue="9.89e-16"
     Typing          2901..3336
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.977"
                     /coverage="83.0"
                     /evalue="0.0"
ORIGIN
        1 gtcttgagtc caacccggaa agacacgaca aagcgccact ggcagcagcc actggtaaca
       61 ggattagcag agcgagttaa tgtaggtggt gctatagagt tcttgaagtg gtggcctaac
      121 tacggctaca ctggaaggac agtatttggt atctgcgctc tgctgaagcc agttaccagg
      181 ttaagcagtt ccccaactga cttaaccttc gaaaaaccac ctccccaggt ggttttttcg
      241 tttcttggag aagagactac gacgacaaat gacggatctc aagaagatcc ttttaacgta
      301 caaaaatttc cgttctccaa actacccacc aggataactt accaatcata aaaatcatga
      361 taggccacta cggtcgatgt cttgaagcaa tgctcggtta tagtcgttta tctctgagga
      421 tttttagctt gtaaccaatc aggcaaagtc gttattgatg ccggttcatt agagaaatat
      481 aggggccaat ccagggatta ccggggcatg tgatttttga ctaatttttt gtactgcgac
      541 cgtcagaatg agttaaacgc gtatctacat tgaagcagtt caatatgagg aaaacaggaa
      601 tgacagcaca agatgtaatc aacgttctca ctattcttaa ggccaacgac tcaaccagtt
      661 ttagcaagat tcaacgcgcg ttaaagatga gtatttcgca gttggagggc atcattgatg
      721 ggttaactgc aatgggaata gtgtataaat catcattcac ttcatacagc cttactgagt
      781 taacctctaa acctgttgtt agtgacggtg taagaaaggc attcgaagat atcattacca
      841 atcgcggtac ttacctgtca gaagaactac tacaaaaggt aagtacacca ttcatcccac
      901 tgatgacgca cgaatacaaa aatgccccag ttaaagtgat gatcgtgggg caagaaactc
      961 tgggaatgga agatgctttc agtaccatcg tttcggtcga tgactacatt aatgagagca
     1021 ttgaatcctt caataaattc aattttggtg aagatttaag gaatagccac ttttggtatg
     1081 catttgatga agtagtaaag tattttaacc taccatccag aaggcatgct tattggacta
     1141 atcttcataa gtttcaatta attgaaaatg atggagatag tgtcagcatt tccaaactac
     1201 cttcaaaaga tatcatgaca atgattcata tgcagcgtga attattcttg gctgaaatta
     1261 aagataccaa gccagatatc atcatctact tcacgggtgg gcaaacctgg gtgttagatc
     1321 attatctaaa caatggtaaa aaattagcag ttaaggcaat agatgaacgc tcgcatctgg
     1381 ggattatcca gacagaattt ttgcattgcc caatcgctat atgtaccgac caccctgcta
     1441 gaaggggata tactcaagcc atcgtagatc atagagctaa tctgcttaaa tatgctgctg
     1501 acaaatttta tgcaagtgaa tcggcacggg tttaacagac cacccagagt catttaagat
     1561 cgcttacatc gaaatgtttt ataacagtaa cgtcggcatg gttctagcga acacatgtca
     1621 ccgacagaat atgaaaacca gtattatcaa cggctcggaa gtgtctagat tatccgtggc
     1681 gattcaattt accataacat ccgttgcccg caccgcctga gaagctctca gggcgtttct
     1741 gacgggaaac cggtaaaaca ggcaacaaac cacccgaaaa cccgccagaa acgcgcaggc
     1801 tctgttttta cggcatgcat gagtatgcgc gcaagtgcat agcgcggaaa ttcacaccat
     1861 tcagccaggg gaagtcctgt ttccggcgtt cttcccatcc gaaaacggtg aacggggacg
     1921 caatttattg cgtggccgtg aagcgttgcc ggcgcagccg gaaaacccgc tgtcagcacg
     1981 ttcaggaagg gggtgatgta caaatggcac agaggatgaa agtgacgtat gagctgaagg
     2041 aatgatgtaa aagtgatgta taaatgatgt aaaagtgttg taaaagtgat gtatgaactg
     2101 aaggagcgat gtaattctgt agtcaggaag aataacccgt tcatgcaggc atgaacgata
     2161 cagtgaggaa cgcttttttt tgtcacgatc tccccttaac ctgcgtaaat caccctccat
     2221 ggttgattat ttttcaacct caaaatggtc atacacctaa cgcagccgcg attttcatcg
     2281 caactgcatg aattaaaaga aaaaaaatga atgtttcgtt ttcacgagta atacccaggt
     2341 attaaaaacc cactgtaatt acatgaaaat aaagaaataa aaggtaatac cggcgtatta
     2401 ccacgtacgc gggcaagcga aaaagctata acgcttcccg gccgacaggc ggcccagaat
     2461 ccacaggggc atgcaggatc tcttcagtaa ccttcgccat taaatcaaaa aggtcatatt
     2521 cgccgggaag ctgcgtatca gtcgaacccc gttgctcatc atattcagat ggcatggggt
     2581 gatatccagt agcagagagg ttgttagcgg gtttcggggc gcagccctga accagtcacg
     2641 tagcgctagc ggagtgtata ctggctaaac ttcagagatg ccaaggaagg gacaggatat
     2701 gttttggagt atcgccacca cggtggcgat actccaaaac gcctggtcag ggcacagccc
     2761 cgacacccca gagccgactg taggtcactg ggcgaacgcg gcggaatgat gtcggatgac
     2821 gtcattttgc ggcgttcgcc ctatcctgca tcgtattaaa aaatgcagct atggcgcgta
     2881 cggtgccaaa gataagcccg gagatattcc gcttcctcgc tcactgactc gctccgctcg
     2941 gtcgttcggc tgcggcgagc ggtaccggct tactggcggg gcggaaattt cctggcatct
     3001 tccaggaaga agcttaacag ggaagcaaga aggccacggc gaagccgttt ttccataggc
     3061 tccgcccccc tgacaagcat cacgaaatct gacgctcaaa tcagtggtgg cgaaacccga
     3121 caggacttaa agataccagg cgtttccccc tggtggctcc ctcgtgcgct ctcctgttcc
     3181 tgcctttcgg tttaccggtg tcattccgct gttatggccg cgtttatctc attccacgcc
     3241 tgacactcag ttccgggtag gcagttcgct ccaagctgga ctgtatgcac gaaccccccg
     3301 ttcagtccga ctgctgcgcc ttatccggta actatc
//
