LOCUS       NZ_CP128264             2096 bp    DNA     circular CON 29-JUN-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg isolate
            FT3-7B plasmid pColpVC, complete sequence.
ACCESSION   NZ_CP128264
VERSION     NZ_CP128264.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35717869
            Assembly: GCF_030345015.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Oladeinde,A.
  TITLE     Survival of Salmonella enterica serovar Heidelberg in pine shavings
            used as broiler litter
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Oladeinde,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2023) ARS, USDA, 950 College station Rd, Athens,
            Georgia 30605, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 25-JAN-2022
            Assembly Method                   :: Unicycler v. 0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 70.0x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/26/2023 23:16:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,773
            CDSs (total)                      :: 4,651
            Genes (coding)                    :: 4,543
            CDSs (with protein)               :: 4,543
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 45 of 108
            Pseudo Genes (incomplete)         :: 73 of 108
            Pseudo Genes (internal stop)      :: 24 of 108
            Pseudo Genes (multiple problems)  :: 29 of 108
            Pseudo Genes (short protein)      :: 1 of 108
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP128264.1.
            Bacteria and source DNA available from Adelumola Oladeinde; 950
            college station road, Athens, Georgia, USA.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /serovar="Heidelberg"
                     /isolate="FT3-7B"
                     /isolation_source="Pine shavings"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pColpVC"
                     /geo_loc_name="USA:Georgia"
                     /lat_lon="33.928175 N 83.356358 W"
                     /collection_date="2019-07-23"
                     /collected_by="Adelumola Oladeinde"
     gene            962..1951
                     /locus_tag="QR684_RS23865"
                     /old_locus_tag="QR684_23865"
     CDS             962..1951
                     /locus_tag="QR684_RS23865"
                     /old_locus_tag="QR684_23865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1954..2035
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(1678..1869)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 gtgagtttgt ataagtgcgc acttcgtgag attccctgac tgccagtttg tcgattgcgc
       61 ggaacggctg cggcacgaaa acggcaaaat gatttactcg ccgtttgtgt gggttgtttt
      121 gtggggtgtc aatggggttg tggtcttttt tgtgggttaa agtgtgggtg attgtgtggg
      181 ctgtgtgttt tgagttgtgg gtgattatgt gggtcattgt gtgggctgta tgcacggcat
      241 ttttttgttc tcctaaaaca caggcacgat aagcggcgta cacaaaacgg ggcgtttcgc
      301 tccgtcgctt gtgccaaagg ggacacccct ttgcaaccct gtgcggttct acgaacctgg
      361 tcaggactgc gccccgacac cccgccaacg cctcacggta cgcgaaaaaa ttccgcgtac
      421 cgttcaccgt tccctgattc gtcaaacaga aaatcgcggg ggcccgcgcc tccggcgtgg
      481 gttccgattt tgtgattgac gacggcacgg gaaaaacact ggggatggtg gttggtgtca
      541 cgcagtgagg ccaaccacct gcaagacggt tttttttgtt gttcacaaaa tcggggtgaa
      601 agtctgtgga tgagatgggt gtaagtgggt ggggttgggt gttttgggtg actgaaaatc
      661 ccgctcaaaa ttcaagcgaa tctcgcgcgc gatccttgta tttatactta agggataact
      721 ctaggattca aattcgcctc cagcccttgt gccgcaaggc ctgaaggggg atttgtcgga
      781 aaatggtttt ggagttattc tgtcgggagt ggtcgcatta aaagcgaccc ccgcaacgag
      841 ggcaatcgtt cgggggtgtg accacctgta ggaattcgaa ttggtgatac gactaacaca
      901 acaggtgata tggcaatgat aacacgtcag atgagccatc gcccactatc gggtggtgcg
      961 catgaaaaac cctgatctcc agaacctcac ggactattcc ccctcagatg cgccctggga
     1021 cgctcacaga agcgtttctg atgacgtggg agggatttac ctgcttgcag ccgaatatga
     1081 gcgctacggg gcgcgtatgg ctctctgtgg tggtttactg cgtttcgggt ggtctaccct
     1141 caaggaaacc ggagaaacgc gtctgaggct gcgtgaggcg catttctgcc gtgtccggca
     1201 ttgtcctgtc tgccagtgga ggcgctccct gatgtggcaa gcccgtttct accagtccct
     1261 gccgcgtatc gtggcggatt atcccgatgc ccgctggatg ttcctgactc tgaccgtgcg
     1321 caactgtgcg atcggggagc tgggcgagat gctgaaccgg atgaatgcag cttttcagcg
     1381 catgaaggtt cgcaaggagt tccggcctgt gcagggctgg atacgtacca cggaagtcac
     1441 ccgcgggagc gacggcagcg cacacccgca cttccacacc ctgatgatgg tgccgcctgg
     1501 catgctaaat gggaaaagtt acgtcaggca tgaacgctgg gttgaactct ggcgggagtg
     1561 tctgcgggtc gattatgacc cgaatgttga tgtccgggca gtgaaacctc gtaagccgaa
     1621 gggcggcgaa tcgctggcct gcgcgaccgc cgaactggtg cgcggtgcgg tggccgaaac
     1681 cctgaaatat tccacgaagc cggctgacat ggtggccgat cctgaatggt tcctcgaact
     1741 gacccgccag acgcacaagc gccgctttgt ggcgaccggc ggcgcactca aagacgtgct
     1801 gaaactcgat caggaaactg acgccgacat ggtgatcggt gatgatattt ccgagggcga
     1861 cgatgacggt tcacgaatcg cgttcgagtg gaaaaccgag gtcagaaagt accgtcgctc
     1921 accgacgaaa gataaaactg aatcaggcta gcggggtgtc ggggtgcacc cctgaccaga
     1981 tggcaattgt gatagcgtcg cgtgtgacgg tattacaatt acacatcctg tcccgaaaat
     2041 tcccgccgtt tctcggtttt ttgagcgtcg cagaccgcac gacaaacgaa cctaag
//
