LOCUS       NZ_CP126881             2495 bp    DNA     circular CON 21-APR-2024
DEFINITION  Enterobacter hormaechei strain Ehh_21 plasmid pEh21_3, complete
            sequence.
ACCESSION   NZ_CP126881
VERSION     NZ_CP126881.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35394410
            Assembly: GCF_030848005.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss
            companion animal clinic and their genetic relationship to clinical
            human isolates
  JOURNAL   J Antimicrob Chemother 78 (12), 2950-2960 (2023)
   PUBMED   37923369
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) Institute of Veterinary Bacteriology,
            University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 95x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030848005.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 13:59:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,707
            CDSs (total)                      :: 4,593
            Genes (coding)                    :: 4,487
            CDSs (with protein)               :: 4,487
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 34 of 106
            Pseudo Genes (incomplete)         :: 77 of 106
            Pseudo Genes (internal stop)      :: 15 of 106
            Pseudo Genes (multiple problems)  :: 19 of 106
            Pseudo Genes (short protein)      :: 1 of 106
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126881.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="Ehh_21"
                     /isolation_source="stools"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pEh21_3"
                     /geo_loc_name="Switzerland"
                     /collection_date="2020-06-19"
     gene            871..1089
                     /locus_tag="QPR63_RS23525"
                     /old_locus_tag="QPR63_23500"
     CDS             871..1089
                     /locus_tag="QPR63_RS23525"
                     /old_locus_tag="QPR63_23500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            complement(1380..1565)
                     /locus_tag="QPR63_RS23530"
                     /old_locus_tag="QPR63_23505"
     CDS             complement(1380..1565)
                     /locus_tag="QPR63_RS23530"
                     /old_locus_tag="QPR63_23505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1931..2158)
                     /locus_tag="QPR63_RS23535"
                     /old_locus_tag="QPR63_23510"
     CDS             complement(1931..2158)
                     /locus_tag="QPR63_RS23535"
                     /old_locus_tag="QPR63_23510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          1246..1333
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(79..607)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 cccctaaccg tggtaacagt cttgtgcgag acatgtcacc aaatttgtcc tttcagtgta
       61 gcctcactaa ggccgccact tcaagaactc ttgagacatc tctcgcacat cctgtttgcc
      121 aatggccgtt gccaatggcg attagtcgtg tctttccggg ttggactcaa gttgatagtt
      181 accggataag gcgcagcggt cggactgaac ggggggttcg tgcatacagt ccatcctgga
      241 gcgaactgcc ttcccggaac tgagtgtcag gcgtggaatg agaaaccgcg gccataacag
      301 cggagtgaca ccggtaaacc gaaaggcagg aatgcggggg agcacgaggg agccaccagg
      361 gggaaacgcc tggtatcttt aagccgcatc gggtttcgcc accactgatt tgagcgtcag
      421 attctgtgat gcttgtcagg ggggcggagc ctatggaaaa acggctttgg cgcggcctta
      481 tgctttcttc gttaagtatc ttcctggcat cccccaggaa atttctgatc catccgtaag
      541 cccgtcccgc tcgccgcagc cgaacgaccg agcggagcga gtcagtgagc gaggaagcgg
      601 aatatattct gtatcacatt ttctcctgac gcgttttctt tcactttctg cgcctgtctt
      661 atgtggcatt aatgctatgt gttactgcca tgctacatct taagccagta tacactccgc
      721 tagtgctccg tgactggtcc ggcgctgcgc ccggaacccg cctgtaccgg ttcagcagcc
      781 gttccggcct gactgcaatt tttttttttt catccctgcc cgctaccctg taaacctttc
      841 ttctgcgttg ccgttaacag taggtaagcc atgtttggtt tttcttccgg agccctgatg
      901 actcttagtg atgatgagcg acacctgctt gtgtccgttg tttcggtctg gctacggcgt
      961 gccggagggg atgccggagc catgatgctg gatgcatacc ggcagatttt gtctgaaacc
     1021 gaaccggccg taaggactgt catgctcgaa tttcttgaat ccgttcgcat tcattacatt
     1081 tcgtcctgag cattttctgt atttctgtcc atacttaaac gaggcggccg tcacggacgg
     1141 tggtcgtcgt tccatgatgc tgttatggac gagtgagagt aatctaatct aacttgattg
     1201 agttccgggc gtgccgcccg gttttttttg ctgtttcccg gtgtccgttc cgggacagga
     1261 tgtgcatttg taataccgcg cacgcgccgg catcacaaat accctggtca gggctgcgcc
     1321 ccgacacccc gccatcgcct cacggccgcg cactgaattg cgcacccgtt caccgatttt
     1381 cacgcatttt cctcgcctat ctgtgcgttc agcatggcgt aaagcgcttc ggcctgatcg
     1441 tgcaggtgct cacagcagcc ggcagcctca tccagatcca tctgctcgag ccgctcaagg
     1501 aggagaagtg tctgtgcgcg gataaatttg gccatattga gggcggcgga ttcctgtctg
     1561 gtcactggtg attttccccg tctggtgatg atttttgcgt gaaaagagca tggcgtcatt
     1621 ctggtgcata gtcatgcatg ccgttaaaat ttaacaggcg cgtttctgac gggttccggg
     1681 gtggtttgtt gtggtttttg tcatggtttc gtcaggaacg cgctgaacgc gtctcaggcg
     1741 gtgcgggcaa cggatgttat ggtaaattct tgggggcttg attataaaat accgcacttc
     1801 ctcttatgtc ttgtgctttt tagacaaccc tgaaagcttt tagctttggt gatgcaattt
     1861 gctgggattt tggcggagaa ccacaggtaa agaaaaaggc cacattagcg gcctttttcg
     1921 gagaagatgc tcagtgcgga atttcggaga cttctttaac gtcggtttta ttgatctgct
     1981 gtttgacacc attcgcgtct gtatagccaa gcaggcctga gtctgattct ttaggtttgc
     2041 cgtcgctgac aatagtgcga ccgtcattgg tgtgtatggc atagcttgtg cgcgtgcagc
     2101 cggtgagggc tgaaagcgca actgccgctg cgaacactga aacaaaaatc tttttcaaag
     2161 ccagctcctt ttatccatat cagttttggt cactaaccat ctaactatag gtcatttttt
     2221 atgtgaaaag aggcttgatg gtgggctgta tatcgagtta ggcgcgaggt gctatggtca
     2281 aagtgtggtg tcaggcgggg aggaggctta tatgagatgt aatccggccg atacatatac
     2341 caagatgatt taagtattcc tctttgtgag gttggatgtc taatttataa aggatcttct
     2401 tgagatcctt tttttccgcg cgtaatctct tgccctgtaa acgaaaaaac caccctggca
     2461 ggtggttttt cgaaggttag gtaatcctgg cagat
//
