LOCUS       NZ_CP126872             2495 bp    DNA     circular CON 21-APR-2024
DEFINITION  Enterobacter hormaechei strain Ehh_5 plasmid pEh5_3, complete
            sequence.
ACCESSION   NZ_CP126872
VERSION     NZ_CP126872.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35394387
            Assembly: GCF_030847825.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss
            companion animal clinic and their genetic relationship to clinical
            human isolates
  JOURNAL   J Antimicrob Chemother 78 (12), 2950-2960 (2023)
   PUBMED   37923369
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) Institute of Veterinary Bacteriology,
            University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030847825.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 14:00:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,920
            CDSs (total)                      :: 4,802
            Genes (coding)                    :: 4,701
            CDSs (with protein)               :: 4,701
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 102
            CDSs (without protein)            :: 101
            Pseudo Genes (ambiguous residues) :: 0 of 102
            Pseudo Genes (frameshifted)       :: 25 of 102
            Pseudo Genes (incomplete)         :: 75 of 102
            Pseudo Genes (internal stop)      :: 19 of 102
            Pseudo Genes (multiple problems)  :: 18 of 102
            Pseudo Genes (short protein)      :: 1 of 102
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126872.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="Ehh_5"
                     /isolation_source="lower respiratory tract"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pEh5_3"
                     /geo_loc_name="Switzerland"
                     /collection_date="2019-10-24"
     gene            951..1178
                     /locus_tag="QPR54_RS24590"
                     /old_locus_tag="QPR54_24565"
     CDS             951..1178
                     /locus_tag="QPR54_RS24590"
                     /old_locus_tag="QPR54_24565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1544..1729
                     /locus_tag="QPR54_RS24595"
                     /old_locus_tag="QPR54_24570"
     CDS             1544..1729
                     /locus_tag="QPR54_RS24595"
                     /old_locus_tag="QPR54_24570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2020..2238)
                     /locus_tag="QPR54_RS24600"
                     /old_locus_tag="QPR54_24575"
     CDS             complement(2020..2238)
                     /locus_tag="QPR54_RS24600"
                     /old_locus_tag="QPR54_24575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(1777..1864)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          8..536
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 tacagaatat attccgcttc ctcgctcact gactcgctcc gctcggtcgt tcggctgcgg
       61 cgagcgggac gggcttacgg atggatcaga aatttcctgg gggatgccag gaagatactt
      121 aacgaagaaa gcataaggcc gcgccaaagc cgtttttcca taggctccgc ccccctgaca
      181 agcatcacag aatctgacgc tcaaatcagt ggtggcgaaa cccgatgcgg cttaaagata
      241 ccaggcgttt ccccctggtg gctccctcgt gctcccccgc attcctgcct ttcggtttac
      301 cggtgtcact ccgctgttat ggccgcggtt tctcattcca cgcctgacac tcagttccgg
      361 gaaggcagtt cgctccagga tggactgtat gcacgaaccc cccgttcagt ccgaccgctg
      421 cgccttatcc ggtaactatc aacttgagtc caacccggaa agacacgact aatcgccatt
      481 ggcaacggcc attggcaaac aggatgtgcg agagatgtct caagagttct tgaagtggcg
      541 gccttagtga ggctacactg aaaggacaaa tttggtgaca tgtctcgcac aagactgtta
      601 ccacggttag gggatctgcc aggattacct aaccttcgaa aaaccacctg ccagggtggt
      661 tttttcgttt acagggcaag agattacgcg cggaaaaaaa ggatctcaag aagatccttt
      721 ataaattaga catccaacct cacaaagagg aatacttaaa tcatcttggt atatgtatcg
      781 gccggattac atctcatata agcctcctcc ccgcctgaca ccacactttg accatagcac
      841 ctcgcgccta actcgatata cagcccacca tcaagcctct tttcacataa aaaatgacct
      901 atagttagat ggttagtgac caaaactgat atggataaaa ggagctggct ttgaaaaaga
      961 tttttgtttc agtgttcgca gcggcagttg cgctttcagc cctcaccggc tgcacgcgca
     1021 caagctatgc catacacacc aatgacggtc gcactattgt cagcgacggc aaacctaaag
     1081 aatcagactc aggcctgctt ggctatacag acgcgaatgg tgtcaaacag cagatcaata
     1141 aaaccgacgt taaagaagtc tccgaaattc cgcactgagc atcttctccg aaaaaggccg
     1201 ctaatgtggc ctttttcttt acctgtggtt ctccgccaaa atcccagcaa attgcatcac
     1261 caaagctaaa agctttcagg gttgtctaaa aagcacaaga cataagagga agtgcggtat
     1321 tttataatca agcccccaag aatttaccat aacatccgtt gcccgcaccg cctgagacgc
     1381 gttcagcgcg ttcctgacga aaccatgaca aaaaccacaa caaaccaccc cggaacccgt
     1441 cagaaacgcg cctgttaaat tttaacggca tgcatgacta tgcaccagaa tgacgccatg
     1501 ctcttttcac gcaaaaatca tcaccagacg gggaaaatca ccagtgacca gacaggaatc
     1561 cgccgccctc aatatggcca aatttatccg cgcacagaca cttctcctcc ttgagcggct
     1621 cgagcagatg gatctggatg aggctgccgg ctgctgtgag cacctgcacg atcaggccga
     1681 agcgctttac gccatgctga acgcacagat aggcgaggaa aatgcgtgaa aatcggtgaa
     1741 cgggtgcgca attcagtgcg cggccgtgag gcgatggcgg ggtgtcgggg cgcagccctg
     1801 accagggtat ttgtgatgcc ggcgcgtgcg cggtattaca aatgcacatc ctgtcccgga
     1861 acggacaccg ggaaacagca aaaaaaaccg ggcggcacgc ccggaactca atcaagttag
     1921 attagattac tctcactcgt ccataacagc atcatggaac gacgaccacc gtccgtgacg
     1981 gccgcctcgt ttaagtatgg acagaaatac agaaaatgct caggacgaaa tgtaatgaat
     2041 gcgaacggat tcaagaaatt cgagcatgac agtccttacg gccggttcgg tttcagacaa
     2101 aatctgccgg tatgcatcca gcatcatggc tccggcatcc cctccggcac gccgtagcca
     2161 gaccgaaaca acggacacaa gcaggtgtcg ctcatcatca ctaagagtca tcagggctcc
     2221 ggaagaaaaa ccaaacatgg cttacctact gttaacggca acgcagaaga aaggtttaca
     2281 gggtagcggg cagggatgaa aaaaaaaaaa ttgcagtcag gccggaacgg ctgctgaacc
     2341 ggtacaggcg ggttccgggc gcagcgccgg accagtcacg gagcactagc ggagtgtata
     2401 ctggcttaag atgtagcatg gcagtaacac atagcattaa tgccacataa gacaggcgca
     2461 gaaagtgaaa gaaaacgcgt caggagaaaa tgtga
//
