LOCUS       NZ_CP126860             2056 bp    DNA     circular CON 21-APR-2024
DEFINITION  Enterobacter hormaechei strain Ehh_7 plasmid pEh7_9, complete
            sequence.
ACCESSION   NZ_CP126860
VERSION     NZ_CP126860.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35394390
            Assembly: GCF_032202685.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss
            companion animal clinic and their genetic relationship to clinical
            human isolates
  JOURNAL   J Antimicrob Chemother 78 (12), 2950-2960 (2023)
   PUBMED   37923369
REFERENCE   2  (bases 1 to 2056)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) Institute of Veterinary Bacteriology,
            University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032202685.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 14:01:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,106
            CDSs (total)                      :: 4,993
            Genes (coding)                    :: 4,900
            CDSs (with protein)               :: 4,900
            Genes (RNA)                       :: 113
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 25 of 93
            Pseudo Genes (incomplete)         :: 69 of 93
            Pseudo Genes (internal stop)      :: 13 of 93
            Pseudo Genes (multiple problems)  :: 13 of 93
            Pseudo Genes (short protein)      :: 1 of 93
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126860.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="Ehh_7"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pEh7_9"
                     /geo_loc_name="Switzerland"
                     /collection_date="2019-12-07"
     gene            complement(321..512)
                     /locus_tag="QPR83_RS25525"
                     /old_locus_tag="QPR83_25505"
     CDS             complement(321..512)
                     /locus_tag="QPR83_RS25525"
                     /old_locus_tag="QPR83_25505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     gene            complement(1065..2054)
                     /locus_tag="QPR83_RS25530"
                     /old_locus_tag="QPR83_25510"
     CDS             complement(1065..2054)
                     /locus_tag="QPR83_RS25530"
                     /old_locus_tag="QPR83_25510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_023569045.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIGELGDTLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESE"
                     /name="protein rep"
     Typing          1148..1337
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.906"
                     /coverage="99.0"
                     /evalue="1.72e-88"
ORIGIN
        1 gcaccgtccc atactgggcg atggctcatt tgacgtgtta tcattgccgt atcacctgtg
       61 ttgtctgtcg caaaatagaa ttcctacagg tggtcacacc cccgaacgat ggccgtcgtt
      121 gcgggggtcg cttttaacgc gaccactccc gacagaataa cttcaaagtc attttcaggc
      181 aaatcacgct gaaacccttg aggcacaagg gctgaggctt atttttaacg ccagagttat
      241 cccttaagta taaatacaag gatcgcgcgc atgaaaatcc ggcgattttc tgaccaattt
      301 ccctcgcgcg cacgcgaggc tcacaattca gggtccgatt ctgacatcaa atcatgagcc
      361 aacctggtca atttccgctg acggatatgc cggggatcat tttccttttc ggccttccgc
      421 tgtgcatagg ccgccatgaa catttcccga tccacatgcg cacccatctc atcgagaatc
      481 tcaaacagcc ggttatccag tctgacgatc atacctaccc cctcaaaaac gcctatcagg
      541 tggttgcgct cactgcgtga tcacaaccac cccctgtaag tattctacgg gtgctgtcgt
      601 caatcactaa atcggaaccc actggcaagc cagcgggacc ccgcgattta gcgtttgacg
      661 atttcgggaa cggcgaacgc tgacagattt taatctggcg gcgtgaggtg ttggcagggt
      721 gtcggggcgc agccctgacg gatcgttttt ggtaccgaca tcgtgatggc ggtactccaa
      781 aaacacatct tgtccggtgt cagtttttgt ttttcgtggg cttgccccac cgcgcagttt
      841 ctcaccgaag gggagaaact actaagcgcg ccttccggaa aattaccgga aggaaaaccc
      901 aggttcggaa tccgaactca gcaatcgagt gacgtcactt tgcggcggca gccctatcct
      961 gcatcggagt aaaatcaatc ggacaagatg tgactttggt acaccgccac caaggtgacg
     1021 gatgcccaaa gtcctcatgg tcagggcgca gccccgacac cccgttactc tgattcggtt
     1081 ttatctttcg ttggtgagcg acggtatttt ctgacctcgg ttttccactc gaacgcgatg
     1141 cgtgaaccgt catcgtcgcc ctcggaaata tcatccccga tcaccatgtc ggcgtcggtt
     1201 tcctgatcga gtttcaatac gtctttgagt gcgccgccgg tcgccacaaa gcggcgcttg
     1261 tgcgtctggc gggtcagttc gaggaaccat tcaggatcgg cgaccatgtc ggccggcttc
     1321 gtggaatatt tcagggtctc ggccaccgcg ccgcgcacca gttcggcggt cgcgcaggcc
     1381 agcgattcgc cgtccttcgg cttccggggt ttcactgccc ggacatcgac attcggatcg
     1441 tagctgaccc gaaggcactc ccgccacagc tcaacccagc gcgcatgttt gacgtaactc
     1501 ttcccgttaa gcatgccagg cggaaccatc atcagtgtgt ggaagtgcgg gtgtgcgctg
     1561 ccgtcactgc cgcgggtgac ttccgtggtg cggatccatc cctgaactgg tctgaactct
     1621 ttgcgatcct tcagccgctg gaaagccgtg ttcatccggc tcagcgtatc gcccagctcc
     1681 ccgatcgcac agttgcgcac ggtcagggtc aggaacatcc agcgggaatc ggggtaatcc
     1741 gccacgatac gcggcaggga ctggtagaaa cgggcttgcc acatcaggga gcgcctccac
     1801 tggcagacag gacagtgccg gacacggcag aaatgcgcct cacgcagcct caggcgcgtt
     1861 tctccggttt ctttgagggt agaccacccg aaacgcagta aaccgccgca ggaggccata
     1921 cgcgccccgt agcgctcata ttcggccgca agcaggtaaa tccctcccac gtcgtcagaa
     1981 acgcttctgt gagcgtccca gggcgcatct gagggggaat agtccgtgag gttctggagt
     2041 tcagggtttt tcatgc
//
