LOCUS       NZ_CP126859             2494 bp    DNA     circular CON 21-APR-2024
DEFINITION  Enterobacter hormaechei strain Ehh_7 plasmid pEh7_8, complete
            sequence.
ACCESSION   NZ_CP126859
VERSION     NZ_CP126859.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35394390
            Assembly: GCF_032202685.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss
            companion animal clinic and their genetic relationship to clinical
            human isolates
  JOURNAL   J Antimicrob Chemother 78 (12), 2950-2960 (2023)
   PUBMED   37923369
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) Institute of Veterinary Bacteriology,
            University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_032202685.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 14:01:28
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,106
            CDSs (total)                      :: 4,993
            Genes (coding)                    :: 4,900
            CDSs (with protein)               :: 4,900
            Genes (RNA)                       :: 113
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 93
            CDSs (without protein)            :: 93
            Pseudo Genes (ambiguous residues) :: 0 of 93
            Pseudo Genes (frameshifted)       :: 25 of 93
            Pseudo Genes (incomplete)         :: 69 of 93
            Pseudo Genes (internal stop)      :: 13 of 93
            Pseudo Genes (multiple problems)  :: 13 of 93
            Pseudo Genes (short protein)      :: 1 of 93
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126859.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="Ehh_7"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pEh7_8"
                     /geo_loc_name="Switzerland"
                     /collection_date="2019-12-07"
     gene            445..663
                     /locus_tag="QPR83_RS25510"
                     /old_locus_tag="QPR83_25490"
     CDS             445..663
                     /locus_tag="QPR83_RS25510"
                     /old_locus_tag="QPR83_25490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            complement(954..1139)
                     /locus_tag="QPR83_RS25515"
                     /old_locus_tag="QPR83_25495"
     CDS             complement(954..1139)
                     /locus_tag="QPR83_RS25515"
                     /old_locus_tag="QPR83_25495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1505..1732)
                     /locus_tag="QPR83_RS25520"
                     /old_locus_tag="QPR83_25500"
     CDS             complement(1505..1732)
                     /locus_tag="QPR83_RS25520"
                     /old_locus_tag="QPR83_25500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          820..907
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          complement(2..194)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.205"
                     /coverage="98.0"
                     /evalue="5.44e-58"
     Typing          complement(1968..2474)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="83.774"
                     /coverage="99.0"
                     /evalue="6.33e-132"
ORIGIN
        1 gtgatgcttg tcaggggggc ggagcctatg gaaaaacggc tttggcgcgg ccttatgctt
       61 tcttcgttaa gtatcttcct ggcatccccc aggaaatttc tgatccatcc gtaagcccgt
      121 cccgctcgcc gcagccgaac gaccgagcgg agcgagtcag tgagcgagga agcggaatat
      181 attctgtatc acattttctc ctgacgcgtt ttctttcact ttctgcgcct gtcttatgtg
      241 gcattaatgc tatgtgttac tgccatgcta catcttaagc cagtatacac tccgctagtg
      301 ctccgtgact ggtccggcgc tgcgcccgga acccgcctgt accggttcag cagccgttcc
      361 ggcctgactg caattttttt ttttcatccc tgcccgctac cctgtaaacc tttcttctgc
      421 gttgccgtta acagtaggta agccatgttt ggtttttctt ccggagccct gatgactctt
      481 agtgatgatg agcgacacct gcttgtgtcc gttgtttcgg tctggctacg gcgtgccgga
      541 ggggatgccg gagccatgat gctggatgca taccggcaga ttttgtctga aaccgaaccg
      601 gccgtaagga ctgtcatgct cgaatttctt gaatccgttc gcattcatta catttcgtcc
      661 tgagcatttt ctgtatttct gtccatactt aaacgaggcg gccgtcacgg acggtggtcg
      721 tcgttccatg atgctgttat ggacgagtga gagtaatcta atctaacttg attgagttcc
      781 gggcgtgccg cccggttttt tttgctgttt cccggtgtcc gttccgggac aggatgtgca
      841 tttgtaatac cgcgcacgcg ccggcatcac aaataccctg gtcagggctg cgccccgaca
      901 ccccgccatc gcctcacggc cgcgcactga attgcgcacc cgttcaccga ttttcacgca
      961 ttttcctcgc ctatctgtgc gttcagcatg gcgtaaagcg cttcggcctg atcgtgcagg
     1021 tgctcacagc agccggcagc ctcatccaga tccatctgct cgagccgctc aaggaggaga
     1081 agtgtctgtg cgcggataaa tttggccata ttgagggcgg cggattcctg tctggtcact
     1141 ggtgattttc cccgtctggt gatgattttt gcgtgaaaag agcatggcgt cattctggtg
     1201 catagtcatg catgccgtta aaatttaaca ggcgcgtttc tgacgggttc cggggtggtt
     1261 tgttgtggtt tttgtcatgg tttcgtcagg aacgcgctga acgcgtctca ggcggtgcgg
     1321 gcaacggatg ttatggtaaa ttcttggggg cttgattata aaataccgca cttcctctta
     1381 tgtcttgtgc tttttagaca accctgaaag cttttagctt tggtgatgca atttgctggg
     1441 attttggcgg agaaccacag gtaaagaaaa aggccacatt agcggccttt ttcggagaag
     1501 atgctcagtg cggaatttcg gagacttctt taacgtcggt tttattgatc tgctgtttga
     1561 caccattcgc gtctgtatag ccaagcaggc ctgagtctga ttctttaggt ttgccgtcgc
     1621 tgacaatagt gcgaccgtca ttggtgtgta tggcatagct tgtgcgcgtg cagccggtga
     1681 gggctgaaag cgcaactgcc gctgcgaaca ctgaaacaaa aatctttttc aaagccagct
     1741 ccttttatcc atatcagttt tggtcactaa ccatctaact ataggtcatt ttttatgtga
     1801 aaagaggctt gatggtgggc tgtatatcga gttaggcgcg aggtgctatg gtcaaagtgt
     1861 ggtgtcaggc ggggaggagg cttatatgag atgtaatccg gccgatacat ataccaagat
     1921 gatttaagta ttcctctttg tgaggttgga tgtctaattt ataaaggatc ttcttgagat
     1981 cctttttttc cgcgcgtaat ctcttgccct gtaaacgaaa aaaccaccct ggcaggtggt
     2041 ttttcgaagg ttaggtaatc ctggcagatc ccctaaccgt ggtaacagtc ttgtgcgaga
     2101 catgtcacca aatttgtcct ttcagtgtag cctcactaag gccgccactt caagaactct
     2161 tgagacatct ctcgcacatc ctgtttgcca atggccgttg ccaatggcga ttagtcgtgt
     2221 ctttccgggt tggactcaag ttgatagtta ccggataagg cgcagcggtc ggactgaacg
     2281 gggggttcgt gcatacagtc catcctggag cgaactgcct tcccggaact gagtgtcagg
     2341 cgtggaatga gaaaccgcgg ccataacagc ggagtgacac cggtaaaccg aaaggcagga
     2401 atgcggggga gcacgaggga gccaccaggg ggaaacgcct ggtatcttta agccgcatcg
     2461 ggtttcgcca ccactgattt gagcgtcaga ttct
//
