LOCUS       NZ_CP126830             2495 bp    DNA     circular CON 21-APR-2024
DEFINITION  Enterobacter hormaechei strain 21KM1042 plasmid pKM42_2, complete
            sequence.
ACCESSION   NZ_CP126830
VERSION     NZ_CP126830.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35394397
            Assembly: GCF_030848185.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss
            companion animal clinic and their genetic relationship to clinical
            human isolates
  JOURNAL   J Antimicrob Chemother 78 (12), 2950-2960 (2023)
   PUBMED   37923369
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) Institute of Veterinary Bacteriology,
            University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 60x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030848185.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 13:58:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,921
            CDSs (total)                      :: 4,805
            Genes (coding)                    :: 4,722
            CDSs (with protein)               :: 4,722
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 83
            CDSs (without protein)            :: 83
            Pseudo Genes (ambiguous residues) :: 0 of 83
            Pseudo Genes (frameshifted)       :: 33 of 83
            Pseudo Genes (incomplete)         :: 56 of 83
            Pseudo Genes (internal stop)      :: 13 of 83
            Pseudo Genes (multiple problems)  :: 16 of 83
            Pseudo Genes (short protein)      :: 1 of 83
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126830.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="21KM1042"
                     /isolation_source="abdominal effusion"
                     /host="Dog"
                     /db_xref="taxon:158836"
                     /plasmid="pKM42_2"
                     /geo_loc_name="Switzerland"
                     /collection_date="2021-05-07"
     gene            51..278
                     /locus_tag="QPR57_RS24590"
                     /old_locus_tag="QPR57_24595"
     CDS             51..278
                     /locus_tag="QPR57_RS24590"
                     /old_locus_tag="QPR57_24595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            644..829
                     /locus_tag="QPR57_RS24595"
                     /old_locus_tag="QPR57_24600"
     CDS             644..829
                     /locus_tag="QPR57_RS24595"
                     /old_locus_tag="QPR57_24600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1120..1338)
                     /locus_tag="QPR57_RS24600"
                     /old_locus_tag="QPR57_24605"
     CDS             complement(1120..1338)
                     /locus_tag="QPR57_RS24600"
                     /old_locus_tag="QPR57_24605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(877..964)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          1603..2131
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 atagttagat ggttagtgac caaaactgat atggataaaa ggagctggct ttgaaaaaga
       61 tttttgtttc agtgttcgca gcggcagttg cgctttcagc cctcaccggc tgcacgcgca
      121 caagctatgc catacacacc aatgacggtc gcactattgt cagcgacggc aaacctaaag
      181 aatcagactc aggcctgctt ggctatacag acgcgaatgg tgtcaaacag cagatcaata
      241 aaaccgacgt taaagaagtc tccgaaattc cgcactgagc atcttctccg aaaaaggccg
      301 ctaatgtggc ctttttcttt acctgtggtt ctccgccaaa atcccagcaa attgcatcac
      361 caaagctaaa agctttcagg gttgtctaaa aagcacaaga cataagagga agtgcggtat
      421 tttataatca agcccccaag aatttaccat aacatccgtt gcccgcaccg cctgagacgc
      481 gttcagcgcg ttcctgacga aaccatgaca aaaaccacaa caaaccaccc cggaacccgt
      541 cagaaacgcg cctgttaaat tttaacggca tgcatgacta tgcaccagaa tgacgccatg
      601 ctcttttcac gcaaaaatca tcaccagacg gggaaaatca ccagtgacca gacaggaatc
      661 cgccgccctc aatatggcca aatttatccg cgcacagaca cttctcctcc ttgagcggct
      721 cgagcagatg gatctggatg aggctgccgg ctgctgtgag cacctgcacg atcaggccga
      781 agcgctttac gccatgctga acgcacagat aggcgaggaa aatgcgtgaa aatcggtgaa
      841 cgggtgcgca attcagtgcg cggccgtgag gcgatggcgg ggtgtcgggg cgcagccctg
      901 accagggtat ttgtgatgcc ggcgcgtgcg cggtattaca aatgcacatc ctgtcccgga
      961 acggacaccg ggaaacagca aaaaaaaccg ggcggcacgc ccggaactca atcaagttag
     1021 attagattac tctcactcgt ccataacagc atcatggaac gacgaccacc gtccgtgacg
     1081 gccgcctcgt ttaagtatgg acagaaatac agaaaatgct caggacgaaa tgtaatgaat
     1141 gcgaacggat tcaagaaatt cgagcatgac agtccttacg gccggttcgg tttcagacaa
     1201 aatctgccgg tatgcatcca gcatcatggc tccggcatcc cctccggcac gccgtagcca
     1261 gaccgaaaca acggacacaa gcaggtgtcg ctcatcatca ctaagagtca tcagggctcc
     1321 ggaagaaaaa ccaaacatgg cttacctact gttaacggca acgcagaaga aaggtttaca
     1381 gggtagcggg cagggatgaa aaaaaaaaaa ttgcagtcag gccggaacgg ctgctgaacc
     1441 ggtacaggcg ggttccgggc gcagcgccgg accagtcacg gagcactagc ggagtgtata
     1501 ctggcttaag atgtagcatg gcagtaacac atagcattaa tgccacataa gacaggcgca
     1561 gaaagtgaaa gaaaacgcgt caggagaaaa tgtgatacag aatatattcc gcttcctcgc
     1621 tcactgactc gctccgctcg gtcgttcggc tgcggcgagc gggacgggct tacggatgga
     1681 tcagaaattt cctgggggat gccaggaaga tacttaacga agaaagcata aggccgcgcc
     1741 aaagccgttt ttccataggc tccgcccccc tgacaagcat cacagaatct gacgctcaaa
     1801 tcagtggtgg cgaaacccga tgcggcttaa agataccagg cgtttccccc tggtggctcc
     1861 ctcgtgctcc cccgcattcc tgcctttcgg tttaccggtg tcactccgct gttatggccg
     1921 cggtttctca ttccacgcct gacactcagt tccgggaagg cagttcgctc caggatggac
     1981 tgtatgcacg aaccccccgt tcagtccgac cgctgcgcct tatccggtaa ctatcaactt
     2041 gagtccaacc cggaaagaca cgactaatcg ccattggcaa cggccattgg caaacaggat
     2101 gtgcgagaga tgtctcaaga gttcttgaag tggcggcctt agtgaggcta cactgaaagg
     2161 acaaatttgg tgacatgtct cgcacaagac tgttaccacg gttaggggat ctgccaggat
     2221 tacctaacct tcgaaaaacc acctgccagg gtggtttttt cgtttacagg gcaagagatt
     2281 acgcgcggaa aaaaaggatc tcaagaagat cctttataaa ttagacatcc aacctcacaa
     2341 agaggaatac ttaaatcatc ttggtatatg tatcggccgg attacatctc atataagcct
     2401 cctccccgcc tgacaccaca ctttgaccat agcacctcgc gcctaactcg atatacagcc
     2461 caccatcaag cctcttttca cataaaaaat gacct
//
