LOCUS       NZ_CP126823             2495 bp    DNA     circular CON 21-APR-2024
DEFINITION  Enterobacter hormaechei strain 22KM0641 plasmid pKM41_3, complete
            sequence.
ACCESSION   NZ_CP126823
VERSION     NZ_CP126823.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35394400
            Assembly: GCF_030848165.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss
            companion animal clinic and their genetic relationship to clinical
            human isolates
  JOURNAL   J Antimicrob Chemother 78 (12), 2950-2960 (2023)
   PUBMED   37923369
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) Institute of Veterinary Bacteriology,
            University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 90x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030848165.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 14:18:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,014
            CDSs (total)                      :: 4,898
            Genes (coding)                    :: 4,807
            CDSs (with protein)               :: 4,807
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 91
            CDSs (without protein)            :: 91
            Pseudo Genes (ambiguous residues) :: 0 of 91
            Pseudo Genes (frameshifted)       :: 36 of 91
            Pseudo Genes (incomplete)         :: 62 of 91
            Pseudo Genes (internal stop)      :: 14 of 91
            Pseudo Genes (multiple problems)  :: 18 of 91
            Pseudo Genes (short protein)      :: 1 of 91
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126823.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="22KM0641"
                     /isolation_source="urine"
                     /host="Cat"
                     /db_xref="taxon:158836"
                     /plasmid="pKM41_3"
                     /geo_loc_name="Switzerland"
                     /collection_date="2022-03-02"
     gene            58..285
                     /locus_tag="QPR84_RS25055"
                     /old_locus_tag="QPR84_25045"
     CDS             58..285
                     /locus_tag="QPR84_RS25055"
                     /old_locus_tag="QPR84_25045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            651..836
                     /locus_tag="QPR84_RS25060"
                     /old_locus_tag="QPR84_25050"
     CDS             651..836
                     /locus_tag="QPR84_RS25060"
                     /old_locus_tag="QPR84_25050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1127..1345)
                     /locus_tag="QPR84_RS25065"
                     /old_locus_tag="QPR84_25055"
     CDS             complement(1127..1345)
                     /locus_tag="QPR84_RS25065"
                     /old_locus_tag="QPR84_25055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_198129632.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGAMMLDAYRQ
                     ILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     Typing          complement(884..971)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          1610..2138
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 atgacctata gttagatggt tagtgaccaa aactgatatg gataaaagga gctggctttg
       61 aaaaagattt ttgtttcagt gttcgcagcg gcagttgcgc tttcagccct caccggctgc
      121 acgcgcacaa gctatgccat acacaccaat gacggtcgca ctattgtcag cgacggcaaa
      181 cctaaagaat cagactcagg cctgcttggc tatacagacg cgaatggtgt caaacagcag
      241 atcaataaaa ccgacgttaa agaagtctcc gaaattccgc actgagcatc ttctccgaaa
      301 aaggccgcta atgtggcctt tttctttacc tgtggttctc cgccaaaatc ccagcaaatt
      361 gcatcaccaa agctaaaagc tttcagggtt gtctaaaaag cacaagacat aagaggaagt
      421 gcggtatttt ataatcaagc ccccaagaat ttaccataac atccgttgcc cgcaccgcct
      481 gagacgcgtt cagcgcgttc ctgacgaaac catgacaaaa accacaacaa accaccccgg
      541 aacccgtcag aaacgcgcct gttaaatttt aacggcatgc atgactatgc accagaatga
      601 cgccatgctc ttttcacgca aaaatcatca ccagacgggg aaaatcacca gtgaccagac
      661 aggaatccgc cgccctcaat atggccaaat ttatccgcgc acagacactt ctcctccttg
      721 agcggctcga gcagatggat ctggatgagg ctgccggctg ctgtgagcac ctgcacgatc
      781 aggccgaagc gctttacgcc atgctgaacg cacagatagg cgaggaaaat gcgtgaaaat
      841 cggtgaacgg gtgcgcaatt cagtgcgcgg ccgtgaggcg atggcggggt gtcggggcgc
      901 agccctgacc agggtatttg tgatgccggc gcgtgcgcgg tattacaaat gcacatcctg
      961 tcccggaacg gacaccggga aacagcaaaa aaaaccgggc ggcacgcccg gaactcaatc
     1021 aagttagatt agattactct cactcgtcca taacagcatc atggaacgac gaccaccgtc
     1081 cgtgacggcc gcctcgttta agtatggaca gaaatacaga aaatgctcag gacgaaatgt
     1141 aatgaatgcg aacggattca agaaattcga gcatgacagt ccttacggcc ggttcggttt
     1201 cagacaaaat ctgccggtat gcatccagca tcatggctcc ggcatcccct ccggcacgcc
     1261 gtagccagac cgaaacaacg gacacaagca ggtgtcgctc atcatcacta agagtcatca
     1321 gggctccgga agaaaaacca aacatggctt acctactgtt aacggcaacg cagaagaaag
     1381 gtttacaggg tagcgggcag ggatgaaaaa aaaaaaattg cagtcaggcc ggaacggctg
     1441 ctgaaccggt acaggcgggt tccgggcgca gcgccggacc agtcacggag cactagcgga
     1501 gtgtatactg gcttaagatg tagcatggca gtaacacata gcattaatgc cacataagac
     1561 aggcgcagaa agtgaaagaa aacgcgtcag gagaaaatgt gatacagaat atattccgct
     1621 tcctcgctca ctgactcgct ccgctcggtc gttcggctgc ggcgagcggg acgggcttac
     1681 ggatggatca gaaatttcct gggggatgcc aggaagatac ttaacgaaga aagcataagg
     1741 ccgcgccaaa gccgtttttc cataggctcc gcccccctga caagcatcac agaatctgac
     1801 gctcaaatca gtggtggcga aacccgatgc ggcttaaaga taccaggcgt ttccccctgg
     1861 tggctccctc gtgctccccc gcattcctgc ctttcggttt accggtgtca ctccgctgtt
     1921 atggccgcgg tttctcattc cacgcctgac actcagttcc gggaaggcag ttcgctccag
     1981 gatggactgt atgcacgaac cccccgttca gtccgaccgc tgcgccttat ccggtaacta
     2041 tcaacttgag tccaacccgg aaagacacga ctaatcgcca ttggcaacgg ccattggcaa
     2101 acaggatgtg cgagagatgt ctcaagagtt cttgaagtgg cggccttagt gaggctacac
     2161 tgaaaggaca aatttggtga catgtctcgc acaagactgt taccacggtt aggggatctg
     2221 ccaggattac ctaaccttcg aaaaaccacc tgccagggtg gttttttcgt ttacagggca
     2281 agagattacg cgcggaaaaa aaggatctca agaagatcct ttataaatta gacatccaac
     2341 ctcacaaaga ggaatactta aatcatcttg gtatatgtat cggccggatt acatctcata
     2401 taagcctcct ccccgcctga caccacactt tgaccatagc acctcgcgcc taactcgata
     2461 tacagcccac catcaagcct cttttcacat aaaaa
//
