LOCUS       NZ_CP126806             2496 bp    DNA     circular CON 21-APR-2024
DEFINITION  Enterobacter hormaechei strain Ehh_14 plasmid pEh14_2, complete
            sequence.
ACCESSION   NZ_CP126806
VERSION     NZ_CP126806.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35394403
            Assembly: GCF_030848105.2
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss
            companion animal clinic and their genetic relationship to clinical
            human isolates
  JOURNAL   J Antimicrob Chemother 78 (12), 2950-2960 (2023)
   PUBMED   37923369
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) Institute of Veterinary Bacteriology,
            University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 120x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030848105.2-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 14:04:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,833
            CDSs (total)                      :: 4,717
            Genes (coding)                    :: 4,640
            CDSs (with protein)               :: 4,640
            Genes (RNA)                       :: 116
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 77
            CDSs (without protein)            :: 77
            Pseudo Genes (ambiguous residues) :: 0 of 77
            Pseudo Genes (frameshifted)       :: 28 of 77
            Pseudo Genes (incomplete)         :: 53 of 77
            Pseudo Genes (internal stop)      :: 15 of 77
            Pseudo Genes (multiple problems)  :: 15 of 77
            Pseudo Genes (short protein)      :: 1 of 77
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126806.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="Ehh_14"
                     /isolation_source="rectal swab"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pEh14_2"
                     /geo_loc_name="Switzerland"
                     /collection_date="2021-08-20"
     gene            complement(104..331)
                     /locus_tag="QPR59_RS24150"
                     /old_locus_tag="QPR59_24155"
     CDS             complement(104..331)
                     /locus_tag="QPR59_RS24150"
                     /old_locus_tag="QPR59_24155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            1533..1751
                     /locus_tag="QPR59_RS24155"
                     /old_locus_tag="QPR59_24160"
     CDS             1533..1751
                     /locus_tag="QPR59_RS24155"
                     /old_locus_tag="QPR59_24160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_182407767.1"
                     /translation="MFGFSSGALMTFNDDERHLLVSVVSGWLRRAEGDAGAMMLDAYRQ
                     ILSETEPAARAVMLEFLESVRIHYVSS"
                     /name="hypothetical protein"
     gene            complement(2049..2234)
                     /locus_tag="QPR59_RS24160"
                     /old_locus_tag="QPR59_24165"
     CDS             complement(2049..2234)
                     /locus_tag="QPR59_RS24160"
                     /old_locus_tag="QPR59_24165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_032673404.1"
                     /translation="MTRQESAALNMAKFIRSQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEKDA"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          1254..1423
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="90.698"
                     /coverage="98.0"
                     /evalue="2.0600000000000002e-57"
     Typing          1915..2002
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.382"
                     /coverage="100.0"
                     /evalue="1.5000000000000001e-30"
     Typing          complement(747..1329)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.331"
                     /coverage="97.0"
                     /evalue="0.0"
ORIGIN
        1 ccctgaaagc ttttagcttt ggtgatgcaa tttgctggga ttttggcgga gaaccacagg
       61 taaagaaaaa ggccacatta gcggcctttt tcggagaata tgctcagtgc ggaatttcgg
      121 agacttcttt aacgtcggtt ttattgatct gctgtttgac accattcgcg tctgtatagc
      181 caagcaggcc tgagtctgat tctttaggtt tgccgtcgct gacaatagtg cgaccgtcat
      241 tggtgtgtat ggcatagctt gtgcgcgtgc agccggtgag ggctgaaagc gcaactgccg
      301 ctgcgaacac tgaaacaaaa atctttttca aagccagctc cttttatcca tatcagtttt
      361 ggtcactaac catctaacta taggttattt tttatgtgaa aagaggcttg atggtgggct
      421 gtatatcgag ttaggcgcga ggtgctatgg tcaaagtgtg gtgtcaagcg gggaggaggc
      481 ttatatgaga tgtaatccag cagatacata taccaagatg atttaagtat tcctctttgt
      541 gaggttggat gtctaattta taaaggatct tcttgagatc cttttttttc gcgcgtaatc
      601 tcttgccctg taaacgaaaa aaccaccctg gcaggtggtt tttcgaaggt taggtaatcc
      661 tggcagatcc cctaaccgtg gtaacagtct tgtgcgagac atgtcaccaa atttgtcctt
      721 tcagtgtagc ctcactaagg ccgccacttc aagaactctt gatacatctc tcgcacatcc
      781 tgtttaccaa tggccgttgc caatggcgat tagtcgtgtc tttccgggtt ggactcaagt
      841 tgatagttac cggataaggc gcagcggtcg gactgaacgg ggggttcgtg catacagtcc
      901 atcctggagc gaactgcctt cccggaactg agtgtcaggc gtggaatgag aaaccgcggc
      961 cataacagcg gagtgacacc ggtaaaccga aaggcaggaa tgcgggggag cacgagggag
     1021 ccaccagggg gaaacgcctg gtatctttaa gccgcatcgg gtttcgccac cactgatttg
     1081 agcgtcagat ttcgtgatgc ttgtcagggg ggcggagcct atggaaaaac ggctttgccg
     1141 tggccttatg cctttttcgc taagaacctt cctggcattc tccaggaaat ttctgctctg
     1201 tacgtaagcc cgtaccgctc gccgcagccg aacgaccgag cgcagcgagt cagtgagcga
     1261 ggaagcggaa tatctcctgt atcacatatt ctgctgacgc accgatgccg cctttttctc
     1321 ctgccacatg aagcacttaa ctgacatccg catccgtgcc aacatattaa gccagtatac
     1381 actccgctag cgctgcgtga ctggtccggc gctgcgcccg gaacccgcct gtaccggtta
     1441 agcagccgtt ctggtctgac tgcgattttt ttcattcctg cccgctaccc tgtaaacctt
     1501 tcttctgcgt tgccgttaac aggaggtaag ccatgtttgg tttttcctcc ggagccctga
     1561 tgacttttaa tgatgatgag cgacacctgc ttgtgtccgt tgtttcgggc tggctccggc
     1621 gtgccgaagg ggatgccgga gccatgatgc tggatgcata ccggcagatt ttgtctgaaa
     1681 ccgaaccggc cgcaagggcg gtcatgctcg aatttcttga atcagttcgc attcattacg
     1741 tttcgtcctg agcatttcct gaagcatttc ctgaattttt gtccatactc aatccaggcg
     1801 gccgtcacgg acggtggtcg tcgttccatg atgctgttat ggaagattga gagtaatcta
     1861 acttgattga gttccgggcg tgtcgcccgg ttttttttgc tgtttcccgg tgtccgctcc
     1921 cggacaggat gtgcatttgt aataccgcgc acgcggcggc atcacaaata ccccgttcag
     1981 ggctgcgccc cgacaccccg ccatcgcctc acggccgcgc actgaattgc gcacccgttc
     2041 accgattttc acgcatcttt ctcgcctatc tgtgcgttca gcatggcgta aagcgcttca
     2101 gcctgatcgt gcagatgctc acagcagccg gctgcctcat ccagatccat ctgttcgagc
     2161 cgttcgagga ggaggagtgt ctgtgagcgg ataaatttgg ccatgttgag ggcggcggat
     2221 tcctgtctgg tcactggtga ttttccccgt ctggtgatga tttttgcgtg aaaagagcat
     2281 gccgtcattc tggtgcatag tcatgcatgc cgttaaaatt taacaggcgc gtttctgacg
     2341 ggttccgggg tggtttgttg tggtttttgt catggttccg tcagaaacgc gctgagcgcg
     2401 tctgaggcgg tgcgggcaac ggatgttatg gtaaattctt gggggcttga ttataaaata
     2461 ccgcacttcc tcttatgtct tgtgcttttt agacaa
//
