LOCUS       NZ_CP126766             2507 bp    DNA     circular CON 21-APR-2024
DEFINITION  Enterobacter hormaechei strain Ehh_24 plasmid pEh24_5, complete
            sequence.
ACCESSION   NZ_CP126766
VERSION     NZ_CP126766.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN35394413
            Assembly: GCF_030847945.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei
  ORGANISM  Enterobacter hormaechei
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Emergence of OXA-48-producing Enterobacter hormaechei in a Swiss
            companion animal clinic and their genetic relationship to clinical
            human isolates
  JOURNAL   J Antimicrob Chemother 78 (12), 2950-2960 (2023)
   PUBMED   37923369
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Dona,V., Nordmann,P., Kittl,S., Schuller,S., Bouvier,M., Poirel,L.,
            Endimiani,A. and Perreten,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAY-2023) Institute of Veterinary Bacteriology,
            University of Bern, Laenggassstrasse 122, Bern 3012, Switzerland
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. v0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 95x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030847945.1-RS_2024_04_21
            Annotation Date                   :: 04/21/2024 13:59:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,940
            CDSs (total)                      :: 4,823
            Genes (coding)                    :: 4,713
            CDSs (with protein)               :: 4,713
            Genes (RNA)                       :: 117
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 8
            Pseudo Genes (total)              :: 110
            CDSs (without protein)            :: 110
            Pseudo Genes (ambiguous residues) :: 0 of 110
            Pseudo Genes (frameshifted)       :: 31 of 110
            Pseudo Genes (incomplete)         :: 81 of 110
            Pseudo Genes (internal stop)      :: 19 of 110
            Pseudo Genes (multiple problems)  :: 18 of 110
            Pseudo Genes (short protein)      :: 1 of 110
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126766.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Enterobacter hormaechei"
                     /mol_type="genomic DNA"
                     /strain="Ehh_24"
                     /isolation_source="lower respiratory tract"
                     /host="Homo sapiens"
                     /db_xref="taxon:158836"
                     /plasmid="pEh24_5"
                     /geo_loc_name="Switzerland"
                     /collection_date="2018-08-09"
     gene            345..530
                     /locus_tag="QPR70_RS24690"
                     /old_locus_tag="QPR70_24655"
     CDS             345..530
                     /locus_tag="QPR70_RS24690"
                     /old_locus_tag="QPR70_24655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_013772937.1"
                     /translation="MTRQESAALNMAKFIRAQTLLLLERLEQMDLDEAAGCCEHLHDQA
                     EALYAMLNAQIGEENA"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(821..1051)
                     /locus_tag="QPR70_RS24695"
                     /old_locus_tag="QPR70_24660"
     CDS             complement(821..1051)
                     /locus_tag="QPR70_RS24695"
                     /old_locus_tag="QPR70_24660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_226860856.1"
                     /translation="MFGFSSGALMTLSDDERHLLVSVVSVWLRRAGGDAGGDAGAMMLD
                     AYRQILSETEPAVRTVMLEFLESVRIHYISS"
                     /name="hypothetical protein"
     gene            2259..2486
                     /locus_tag="QPR70_RS24700"
                     /old_locus_tag="QPR70_24665"
     CDS             2259..2486
                     /locus_tag="QPR70_RS24700"
                     /old_locus_tag="QPR70_24665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_021243043.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPKES
                     DSGLLGYTDANGVKQQINKTDVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     Typing          complement(578..665)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.86e-39"
     Typing          1316..1844
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.598"
                     /coverage="88.0"
                     /evalue="0.0"
ORIGIN
        1 gctaatgtgg cctttttctt tacctgtggt tctccgccaa aatcccagca aattgcatca
       61 ccaaagctaa aagctttcag ggttgtctaa aaagcacaag acataagagg aagtgcggta
      121 ttttataatc aagcccccaa gaatttacca taacatccgt tgcccgcacc gcctgagacg
      181 cgttcagcgc gttcctgacg aaaccatgac aaaaaccaca acaaaccacc ccggaacccg
      241 tcagaaacgc gcctgttaaa ttttaacggc atgcatgact atgcaccaga atgacgccat
      301 gctcttttca cgcaaaaatc atcaccagac ggggaaaatc accagtgacc agacaggaat
      361 ccgccgccct caatatggcc aaatttatcc gcgcacagac acttctcctc cttgagcggc
      421 tcgagcagat ggatctggat gaggctgccg gctgctgtga gcacctgcac gatcaggccg
      481 aagcgcttta cgccatgctg aacgcacaga taggcgagga aaatgcgtga aaatcggtga
      541 acgggtgcgc aattcagtgc gcggccgtga ggcgatggcg gggtgtcggg gcgcagccct
      601 gaccagggta tttgtgatgc cggcgcgtgc gcggtattac aaatgcacat cctgtcccgg
      661 aacggacacc gggaaacagc aaaaaaaacc gggcggcacg cccggaactc aatcaagtta
      721 gattagatta ctctcactcg tccataacag catcatggaa cgacgaccac cgtccgtgac
      781 ggccgcctcg tttaagtatg gacagaaata cagaaaatgc tcaggacgaa atgtaatgaa
      841 tgcgaacgga ttcaagaaat tcgagcatga cagtccttac ggccggttcg gtttcagaca
      901 aaatctgccg gtatgcatcc agcatcatgg ctccggcatc ccctccggca tcccctccgg
      961 cacgccgtag ccagaccgaa acaacggaca caagcaggtg tcgctcatca tcactaagag
     1021 tcatcagggc tccggaagaa aaaccaaaca tggcttacct actgttaacg gcaacgcaga
     1081 agaaaggttt acagggtagc gggcagggat gaaaaaaaaa aaattgcagt caggccggaa
     1141 cggctgctga accggtacag gcgggttccg ggcgcagcgc cggaccagtc acggagcact
     1201 agcggagtgt atactggctt aagatgtagc atggcagtaa cacatagcat taatgccaca
     1261 taagacaggc gcagaaagtg aaagaaaacg cgtcaggaga aaatgtgata cagaatatat
     1321 tccgcttcct cgctcactga ctcgctccgc tcggtcgttc ggctgcggcg agcgggacgg
     1381 gcttacggat ggatcagaaa tttcctgggg gatgccagga agatacttaa cgaagaaagc
     1441 ataaggccgc gccaaagccg tttttccata ggctccgccc ccctgacaag catcacagaa
     1501 tctgacgctc aaatcagtgg tggcgaaacc cgatgcggct taaagatacc aggcgtttcc
     1561 ccctggtggc tccctcgtgc tcccccgcat tcctgccttt cggtttaccg gtgtcactcc
     1621 gctgttatgg ccgcggtttc tcattccacg cctgacactc agttccggga aggcagttcg
     1681 ctccaggatg gactgtatgc acgaaccccc cgttcagtcc gaccgctgcg ccttatccgg
     1741 taactatcaa cttgagtcca acccggaaag acacgactaa tcgccattgg caacggccat
     1801 tggcaaacag gatgtgcgag agatgtctca agagttcttg aagtggcggc cttagtgagg
     1861 ctacactgaa aggacaaatt tggtgacatg tctcgcacaa gactgttacc acggttaggg
     1921 gatctgccag gattacctaa ccttcgaaaa accacctgcc agggtggttt tttcgtttac
     1981 agggcaagag attacgcgcg gaaaaaaagg atctcaagaa gatcctttat aaattagaca
     2041 tccaacctca caaagaggaa tacttaaatc atcttggtat atgtatcggc cggattacat
     2101 ctcatataag cctcctcccc gcctgacacc acactttgac catagcacct cgcgcctaac
     2161 tcgatataca gcccaccatc aagcctcttt tcacataaaa aatgacctat agttagatgg
     2221 ttagtgacca aaactgatat ggataaaagg agctggcttt gaaaaagatt tttgtttcag
     2281 tgttcgcagc ggcagttgcg ctttcagccc tcaccggctg cacgcgcaca agctatgcca
     2341 tacacaccaa tgacggtcgc actattgtca gcgacggcaa acctaaagaa tcagactcag
     2401 gcctgcttgg ctatacagac gcgaatggtg tcaaacagca gatcaataaa accgacgtta
     2461 aagaagtctc cgaaattccg cactgagcat cttctccgaa aaaggcc
//
