LOCUS       NZ_CP126184             1858 bp    DNA     circular CON 24-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar 1,4,12:i:- strain BL661
            plasmid unnamed5, complete sequence.
ACCESSION   NZ_CP126184
VERSION     NZ_CP126184.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32643670
            Assembly: GCF_030517155.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 1,4,12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 1,4,12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Lopez Garcia,Ad.V., AbuOun,M. and Anjum,M.F.
  TITLE     Pathogen genomics and phage-based solutions to accurately identify
            and control Salmonella dissemination in poultry flocks
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Lopez Garcia,Ad.V., AbuOun,M. and Anjum,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JAN-2023) Bacteriology, Animal and Plant Health
            Agency, Woodham Lane, Weybridge, Surrey KT153NB, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 105.88x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/22/2023 16:47:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,018
            CDSs (total)                      :: 4,898
            Genes (coding)                    :: 4,741
            CDSs (with protein)               :: 4,741
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 157
            CDSs (without protein)            :: 157
            Pseudo Genes (ambiguous residues) :: 0 of 157
            Pseudo Genes (frameshifted)       :: 56 of 157
            Pseudo Genes (incomplete)         :: 104 of 157
            Pseudo Genes (internal stop)      :: 27 of 157
            Pseudo Genes (multiple problems)  :: 29 of 157
            Pseudo Genes (short protein)      :: 1 of 157
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126184.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Salmonella enterica subsp. enterica serovar
                     1,4,12:i:-"
                     /mol_type="genomic DNA"
                     /strain="BL661"
                     /serovar="1,4,12:i:-"
                     /isolation_source="Poultry"
                     /sub_species="enterica"
                     /db_xref="taxon:2801390"
                     /plasmid="unnamed5"
                     /geo_loc_name="Thailand"
                     /collection_date="2019"
     gene            426..1436
                     /locus_tag="PGC29_RS25090"
                     /old_locus_tag="PGC29_25090"
     CDS             426..1436
                     /locus_tag="PGC29_RS25090"
                     /old_locus_tag="PGC29_25090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006859061.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_302510910.1"
                     /translation="MKNPDSPILSLCDYSTQDSKWDSDRARADQVAKIYASDQQFSRRG
                     ERMFDCSQRLQFAPQSSRLTGEMRLALRHGEFCHVPFCPVCSRRRSLRWMRRLWEALPK
                     LLAENPTARWLFLTLTVKNPPVGELRETLKQMNAAWERLTKRKEFAPVLGWLRSTEITY
                     GNVLGGCHPHFHVVLWVPSSWFKRDYVKHERWVEIWSECLRVDYAAGAHIKRVRPKRGS
                     VPEGASAAEVQRAALEAGVIETLKYTVKSSEIVRDPAWFLELARQTYGLRMIATGGRFR
                     EILQVEKPETDEDLIGADMPAKPDEFEEMAFWLAFDWRRDEKRYKRNPRADRRKD"
                     /name="protein rep"
ORIGIN
        1 ggagtgaggc caaccacctg caagacggtt ttttgttgtt cacaaaatcg gggtgaaagt
       61 ctgtgggtga gatgggtgta agtgggtggg gttgggaggt tttgggttac tgaaaatccc
      121 gctcaaaatt caagcaaatc tcgcgcgcga tccttgtatt tatactatag gcaacaactc
      181 gaggattggt tttccctgtt cagcccagtg ctggcgcggg tttgaggggg ttttggtttg
      241 tggatgtttt gattgcgtct gcggggcttt ttggctaccg tgtgagcaac aggttggtga
      301 ggttccccgg cagtgcgcta acaccccggg ggtgaccacc tgaaaggtaa aattcgatga
      361 gatcaacaca ggtggtaaga acatgctaac acaagatttc tgcccctgcc cactgggggc
      421 gggttatgaa aaatccagat agtccgatcc tctcactgtg tgactacagt acgcaggatt
      481 caaaatggga cagcgatcgc gcgagggctg accaggtggc aaagatttac gcgtcagacc
      541 agcagttttc ccgtcgcggc gagaggatgt ttgattgcag tcagcgttta cagttcgctc
      601 cgcaaagttc ccgtcttaca ggcgagatgc ggcttgcgct gcgtcatggt gaattctgtc
      661 atgtcccctt ctgtccggtg tgcagccgtc gccgctcgtt acgctggatg cgtcgtttgt
      721 gggaggcgct accgaaacta ctggctgaga accctaccgc gagatggctc tttctgaccc
      781 tgaccgtaaa aaaccccccc gttggtgagt tgagagagac gctcaagcag atgaatgcgg
      841 cttgggagcg tttaaccaag cgtaaagaat ttgcgcctgt tctgggctgg ctgcggagta
      901 cggaaatcac ctacgggaat gtactagggg gctgtcatcc ccactttcac gtggtgctct
      961 gggttccttc gtcgtggttc aagcgggatt acgtgaagca tgaacgctgg gtggaaatct
     1021 ggagcgagtg cctgcgggtg gattatgcag cgggggcgca catcaagcgc gtgcggccaa
     1081 aacgcgggag tgtaccggaa ggagcaagcg ctgcagaggt gcaacgggcg gcgctggaag
     1141 cgggggtgat cgagacactg aaatacacgg tgaaatcctc ggaaattgtg cgcgatccgg
     1201 cgtggtttct ggagcttgcg cggcagacct acgggctgcg gatgattgcc acaggaggac
     1261 ggtttcggga gatcctccag gtcgagaagc cggagacgga cgaggatttg attggtgcgg
     1321 acatgccagc gaagccggac gagttcgagg agatggcgtt ctggctggcg ttcgactgga
     1381 ggcgggacga gaaacgctac aagcggaatc ccagagcaga caggcggaag gattgagcgc
     1441 gtttctgagg cgcatagtgg gatggtgcgg cagtggaggt gaaacgcgct cagaagtgtt
     1501 ctaacgtgat tttcagaaac aggcaaggat ttgcccgttt tttcgtttta aggcgctcag
     1561 aagcgttttg agcgcgtttc tggcgcttga tgctacgcaa accatcccct tggtctgttg
     1621 attgccaaaa acgcgcgtat gtcgttttaa cgtgtctctg gtacggtgtc gagggtgtca
     1681 gggctgcgcc ccgacacccc gccaacgcct cacggcccgc gaaaaaattc cgcgtaccgc
     1741 tcaccgttcc cgaactcgtc aaacagaaaa tcgcggggcc ccgcgcctct ggcgtgggtt
     1801 ccgattttgt gattgacgac ggcactggga aaacgctggg gatggtggtt ggtgtcac
//
