LOCUS       NZ_CP126183             2097 bp    DNA     circular CON 24-JUL-2023
DEFINITION  Salmonella enterica subsp. enterica serovar 1,4,12:i:- strain BL661
            plasmid unnamed4, complete sequence.
ACCESSION   NZ_CP126183
VERSION     NZ_CP126183.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN32643670
            Assembly: GCF_030517155.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar 1,4,12:i:-
  ORGANISM  Salmonella enterica subsp. enterica serovar 1,4,12:i:-
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Lopez Garcia,Ad.V., AbuOun,M. and Anjum,M.F.
  TITLE     Pathogen genomics and phage-based solutions to accurately identify
            and control Salmonella dissemination in poultry flocks
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Lopez Garcia,Ad.V., AbuOun,M. and Anjum,M.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JAN-2023) Bacteriology, Animal and Plant Health
            Agency, Woodham Lane, Weybridge, Surrey KT153NB, United Kingdom
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 105.88x
            Sequencing Technology             :: Oxford Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 07/22/2023 16:47:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,018
            CDSs (total)                      :: 4,898
            Genes (coding)                    :: 4,741
            CDSs (with protein)               :: 4,741
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 157
            CDSs (without protein)            :: 157
            Pseudo Genes (ambiguous residues) :: 0 of 157
            Pseudo Genes (frameshifted)       :: 56 of 157
            Pseudo Genes (incomplete)         :: 104 of 157
            Pseudo Genes (internal stop)      :: 27 of 157
            Pseudo Genes (multiple problems)  :: 29 of 157
            Pseudo Genes (short protein)      :: 1 of 157
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126183.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Salmonella enterica subsp. enterica serovar
                     1,4,12:i:-"
                     /mol_type="genomic DNA"
                     /strain="BL661"
                     /serovar="1,4,12:i:-"
                     /isolation_source="Poultry"
                     /sub_species="enterica"
                     /db_xref="taxon:2801390"
                     /plasmid="unnamed4"
                     /geo_loc_name="Thailand"
                     /collection_date="2019"
     gene            429..1418
                     /locus_tag="PGC29_RS25085"
                     /old_locus_tag="PGC29_25085"
     CDS             429..1418
                     /locus_tag="PGC29_RS25085"
                     /old_locus_tag="PGC29_25085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1421..1502
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(1145..1336)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 gtgtcacgca gtgaggccaa ccacctgtaa gacggttttt tttgttgttc acaaaatcgg
       61 ggtgaaagtc tgtggatgag atgggtgtaa gtgggtgggg ttgggtggtt ttgggttact
      121 gaaaatcccg ctcaaaattc aagcaaatct cgcgcgcgat ccttgtattt atacttaagg
      181 gataactcta ggattcaaat tcgcctccag cccttgtgcc gcaaggcctg aggggggatt
      241 tgtcggaaaa tggttttgga gttattctgt cgggagtggt cgcattaaaa gcgacccccg
      301 caacgagggc aatcgttcgg gggtgtgacc acctgtagga attcgaattg gtgatacgac
      361 taacacaaca ggtgatatgg caatgataac acgtcagatg agccatcgcc cactatcggg
      421 tggtgcgcat gaaaaaccct gatctccaga acctcacgga ctattccccc tcagatgcgc
      481 cctgggacgc tcacagaagc gtttctgatg acgtgggagg gatttacctg cttgcagccg
      541 aatatgagcg ctacggggcg cgtatggccc tctgtggtgg tttactgcgt ttcgggtggt
      601 ctaccctcaa ggaaaccgga gaaacgcgtc tgaggctgcg tgaggcgcat ttctgccgtg
      661 tccggcattg tcctgtctgc cagtggaggc gctccctgat gtggcaagcc cgtttctacc
      721 agtccctgcc gcgtatcgtg gcggattatc ccgatgcccg ctggatgttc ctgactctga
      781 ccgtgcgcaa ctgtgcgatc ggggagctgg gcgagatgct gaaccggatg aatgcagctt
      841 ttcagcgcat gaaggttcgc aaggagttcc ggcctgtgca gggctggata cgtaccacgg
      901 aagtcacccg cgggagcgac ggcagcgcac acccgcactt ccacaccctg atgatggtgc
      961 cgcctggcat gctaaatggg aaaagttacg tcaggcatga acgctgggtt gaactctggc
     1021 gggagtgtct gcgggtcgat tatgacccga atgttgatgt ccgggcagtg aaacctcgta
     1081 agccgaaggg cggcgaatcg ctggcctgcg cgaccgccga actggtgcgc ggtgcggtgg
     1141 ccgaaaccct gaaatattcc acgaagccgg ctgacatggt ggccgatcct gaatggttcc
     1201 tcgaactgac ccgccagacg cacaagcgcc gctttgtggc gaccggcggc gcactcaaag
     1261 acgtgctgaa actcgatcag gaaactgacg ccgacatggt gatcggtgat gatatttccg
     1321 agggcgacga tgacggttca cgcatcgcgt tcgagtggaa aaccgaggtc agaaagtacc
     1381 gtcgctcacc gacgaaagat aaaactgaat caggctagcg gggtgtcggg gtgcacccct
     1441 gaccagatgg caattgtgat agcgtcgcgt gtgacggtat tacaattaca catcctgtcc
     1501 cgaaaattcc cgccgtttct cggttttttg agcgtcgcag accgcacgac aaacgaacct
     1561 aaggtgagtt tgtataaatg cgcacttcgt gagattccct gactgccagt ttgtcgattg
     1621 cgcggaacgg ctgcggcacg aaaacggcaa aatgatttac tcgccgtttg tgtgggttgt
     1681 tttgtggggt gtcaatgggg ttgtggtctt ttttgtgggt taaagtgtgg gtgattgtgt
     1741 gggctgtgtg ttttgagttg tgggtgatta tgtgggtcat tgtgtgggct gtatgcacgg
     1801 catttttttg ttctcctaaa acacaggcac gataagcggc gtacacaaaa cggggcgttt
     1861 cgctccgtcg cttgtgccaa aggggacacc cctttgcaac cctgtgcggt tctacgaacc
     1921 tggtcaggac tgcgccccga caccccgcca acgcctcacg gtacgcgaaa aaattccgcg
     1981 taccgttcac cgttccctga ttcgtcaaac agaaaatcgc gggggcccgc gcctccggcg
     2041 tgggttccga ttttgtgatt gacgaaggca cgggaaaaac actggggatg gtggttg
//
