LOCUS       NZ_CP126052             3808 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 182 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP126052
VERSION     NZ_CP126052.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790400
            Assembly: GCF_037477875.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3808)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 81x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477875.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:21:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,684
            CDSs (total)                      :: 5,559
            Genes (coding)                    :: 5,425
            CDSs (with protein)               :: 5,425
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 47 of 134
            Pseudo Genes (incomplete)         :: 84 of 134
            Pseudo Genes (internal stop)      :: 20 of 134
            Pseudo Genes (multiple problems)  :: 15 of 134
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126052.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3808
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="182"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            283..474
                     /locus_tag="P4G32_RS28365"
                     /old_locus_tag="P4G32_28355"
     CDS             283..474
                     /locus_tag="P4G32_RS28365"
                     /old_locus_tag="P4G32_28355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_026056049.1"
                     /translation="MTKQQQTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            474..896
                     /locus_tag="P4G32_RS28370"
                     /old_locus_tag="P4G32_28360"
     CDS             474..896
                     /locus_tag="P4G32_RS28370"
                     /old_locus_tag="P4G32_28360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_016809948.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKAIKVID
                     TSELIRVFGSLDGVIDTVKYDVKSDAESTGVNSVGLHDLQHRIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEYNHEPSSPPHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(1698..1898)
                     /locus_tag="P4G32_RS28375"
                     /old_locus_tag="P4G32_28365"
     CDS             complement(1698..1898)
                     /locus_tag="P4G32_RS28375"
                     /old_locus_tag="P4G32_28365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017802053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 region 4 domain-containing protein"
                     /protein_id="WP_042918523.1"
                     /translation="MFGFGIQGTINKGFFLQMARRDQDAFLQYLYDQGYSAKDISKNFD
                     IPVPSVYNRINAHRGRGPLPN"
                     /name="sigma-70 region 4 domain-containing protein"
     gene            complement(2182..2610)
                     /locus_tag="P4G32_RS28380"
                     /old_locus_tag="P4G32_28370"
     CDS             complement(2182..2610)
                     /locus_tag="P4G32_RS28380"
                     /old_locus_tag="P4G32_28370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000222531.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_016809950.1"
                     /translation="MTYSIEEKWKAGGLSLGWTAIPTVLFFIQNEKKLTSVAFNTLLNL
                     IVHWWNLQEWPHPSMESLAIRMGVSVRTVQRAINDLEKANLLDKKPTSKSDSRYGGRNI
                     YDLTKLVDYLDTMGPSVAEQVKKPRHKRPVYTVRKTTT"
                     /name="helix-turn-helix domain-containing protein"
     gene            2768..2938
                     /locus_tag="P4G32_RS28385"
                     /old_locus_tag="P4G32_28375"
     CDS             2768..2938
                     /locus_tag="P4G32_RS28385"
                     /old_locus_tag="P4G32_28375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001531327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_171482495.1"
                     /translation="MKTEQRHDLIKDTEVFGVSLSLLISRANEKSVTMPSGLSREQRRA
                     WAAEQVRKIHS"
                     /name="hypothetical protein"
     gene            2902..3330
                     /locus_tag="P4G32_RS28390"
                     /old_locus_tag="P4G32_28380"
     CDS             2902..3330
                     /locus_tag="P4G32_RS28390"
                     /old_locus_tag="P4G32_28380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000534558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016809951.1"
                     /translation="MGSGAGAQNPQLNIVSFSETFNLYYTSRFSAKTLDKIDDFIEHFE
                     KYNLFGDPLKKHPAWIGKVSPSWKVPDHYENKEAIELHARANKLWHAHLGDPVFKDTFH
                     GKYKVSDWVIHFQRLTPNHIKLLELGYHDPMELPQNFE"
                     /name="hypothetical protein"
     gene            complement(3592..3675)
                     /locus_tag="P4G32_RS28395"
     CDS             complement(3592..3675)
                     /locus_tag="P4G32_RS28395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058655973.1"
                     /translation="MHEPPVQSDRCALSGNYRLESNPERHD"
                     /name="hypothetical protein"
     Typing          complement(16..235)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.714"
                     /coverage="88.0"
                     /evalue="6.92e-57"
     Typing          complement(3377..3805)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.746"
                     /coverage="91.0"
                     /evalue="1.07e-124"
ORIGIN
        1 tatcagaaat gataggtatc tttatagtcc tgtcgggttt cgccaccact gatttgagcg
       61 tccgcttctg tgatgcttgt caggggggcg gagcctatgg aaaaacggca acgccgcgac
      121 cttattttgt cccctccggc tatcagccct gtcgtcttat gctcttatac gtgagttgcg
      181 accgctcgcc gcagccgaac ggcaggagcg tagcgactga gtgagcgagg aagcggaaag
      241 gagacagttt ttacattgag cactgacgct ctgaggctct ttatgacgaa acaacagcaa
      301 acggcgctaa acatggctaa gttcatccag aatcagtctc tgctcctgct ggagaagctt
      361 aacgagcttg atctcgatgt agaggccgac ctttgtgaga aactccacga tgatgcggag
      421 catcttttcc gtacactgtc ctcgagactg gatgaattac aggatggtaa ctgatggcca
      481 gagtgtctat tagtgaagcg gcacggcttg ttaaggttag tcgccccaca atttacaaga
      541 tgattaacag tgggaagtta agttacacct ctgttgtaaa gcacgggaag gctattaaag
      601 ttattgatac ctcagagctt attagagtgt ttggttctct tgatggtgtc atcgatactg
      661 taaaatatga tgtaaaaagt gacgcagaat ctacaggtgt taacagcgtt ggtttacatg
      721 atttacaaca tagaattgct ttactagaag ctgaaaacga tggtcttaaa ggggctgtta
      781 aggctcgaga tgagcatatt gattcccttc gtcaggctat gcagcttctg gagtacaatc
      841 acgaaccttc ttcaccaccc cattccccgt ggtggaaatt ctggaaaaaa tcctgacccc
      901 gtcatgcttc agttttcctc tccggccatc ccggggagtt cctgaacctt cccaaaaatc
      961 gccagatctc tgaacgctcc tcacgactaa aaatacccac acactacgca aaattaaaat
     1021 tttgcagatt tgtatttaat atcagtggtt tactttcgtg aaatttcgtt ttttaaattt
     1081 tatttacata gatccgactc tatgacgact cgtcatagag tccccggcga gtcgtcatag
     1141 agtcggtaac gactcaggac tataaaaaca atgagttaat aacgacccga ctctagaccc
     1201 gactccccgt ttggttgttt tttagactcg gcgactctgg gtacgactct agtgaagagt
     1261 cgccggtgaa tcgtgtggtg agtcgtccgg cgacttgcca taacgtgatt gccggccgtc
     1321 gacgaacacg attcctgaac gtgctgaaaa ccggttttcc ggctgcgccg gcaacgcttc
     1381 acggccacgc aataaattgc gtccccgttc accgttttcg gatggaaaga acgccggaaa
     1441 caggacttac cctggctgaa tggcgtgagt tttcgcgcta tgcacttgtg cgcatactca
     1501 tgcatgccgt aaaaacggag cctgcgcgtt tctggcgggt tttcgggtgg tttgttgcct
     1561 gttttgccgg ttttccgtca gaaacgccct gaggccgttt tagcggtgcg tacaattgag
     1621 acgttatggt aaatctatac acagagttca gttaaaaaag tcgcctatcc aggcgacttt
     1681 tttgtataga agaaccatta attgggaaga ggtccacggc ctcggtgagc gttgattctg
     1741 ttgtagacgc taggaaccgg aatatcgaag ttcttgctga tatcttttgc tgagtaccct
     1801 tggtcataga gatattgcaa aaatgcatcc tgatctctac gagccatctg aagaaaaaat
     1861 cctttattaa tagtaccttg aattccaaaa ccaaacatag ccacctctat ttttgataaa
     1921 gaaatgataa agaaattagc caaaaaaaac ataaagtcaa gtttttttat ggtttttgtt
     1981 tttttataaa tttgtcactt ctgtgttggt agcgattgtt acgtaggttc gtggtagtag
     2041 tgttatgtta aatattaaca gcttacagga ctattttaac cgtgaagcga tgaaccagcc
     2101 gcaggaccac caatacctat acagcaagca ataccataga gtagttatcg tttttccttc
     2161 gaacagtgca attgctcttt tttaagttgt tgtttttctt acggtatata ccggtctttt
     2221 atgacggggt ttcttaacct gttcagctac tgatgggccc attgtatcca ggtaatcaac
     2281 gagctttgtt agatcataaa tattacgacc tccatatcgg ctatcactct tcgacgttgg
     2341 tttcttgtcc aagagattag ctttttccag atcattgata gctctctgaa ctgtccttac
     2401 agaaaccccc atacgtatgg ctaggctttc cattgatgga tgcggccatt cttgcaaatt
     2461 ccaccaatga acgatcaggt taagcagagt gttaaaggct acggaggtta gctttttctc
     2521 gttctgtata aaaaacaaga cagtaggtat tgcagtccag ccaagagaca aaccgccagc
     2581 cttccatttt tcctcaatag agtaagtcat tgattttcct aaaaaacaaa aatatttgaa
     2641 gtatatatta tatgattatt catatgaata gggtgacatc aacgccatta tagtgcaact
     2701 acaaaagact actctgaaag cggaaaaaag attttttcct gtctgaatta gatacggagt
     2761 taacgatatg aaaaccgaac aacgtcatga tcttattaaa gatactgaag tatttggcgt
     2821 atccttgtct ctgttgattt ccagagcgaa tgagaagtct gttacaatgc catctggtct
     2881 aagtagggag cagagaagag catgggcagc ggagcaggtg cgcaaaatcc acagttgaat
     2941 attgtctcgt tctctgagac tttcaatctc tattacacat cccgattttc tgcaaaaaca
     3001 ctcgataaaa tcgatgattt cattgagcat ttcgaaaaat ataacctctt tggcgatcct
     3061 ttaaaaaaac atccagcttg gattggtaaa gtatcgccgt cgtggaaagt gcctgatcat
     3121 tacgaaaaca aagaagctat tgagctgcac gctagagcta acaagttatg gcatgctcat
     3181 ttaggcgatc cggttttcaa agatacgttt catgggaaat acaaggtttc tgactgggtt
     3241 atccatttcc agcggctgac accgaaccat ataaagcttt tagaactggg ataccatgac
     3301 ccgatggaac taccccaaaa ctttgaatga tcgggtagca gactaaatga aatcttgaga
     3361 ttcattcaac ctcgtcgtaa tctcctgttg tgaaaacgaa aaaaccaccc tggcaggtgg
     3421 tttttcgaag gttatttaat cctggcagat tatctaaccg tggtaacagt cttgtgcgag
     3481 acatgtcacc aaatccgtcc ttccagtgta gcctcagtta ggccgccact tcaagaactc
     3541 tcaatacatc tctcgcacat cctgcttacc agtggccgtt gccaatggcg attagtcgtg
     3601 tctttccggg ttggactcaa gacgatagtt accggacaag gcgcagcggt cggactgaac
     3661 ggggggttcg tgcatacagt ccagcttgga gcgaactgcc tacccggaac tgagtgtcag
     3721 gcgtggaatg agataaacgc ggccataaca gcggaatgac accggtaaac cgaaaggcag
     3781 gaacaggaga gcgcacgagg gagccgcc
//
