LOCUS       NZ_CP126046             2058 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 184 plasmid unnamed5, complete
            sequence.
ACCESSION   NZ_CP126046
VERSION     NZ_CP126046.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790401
            Assembly: GCF_037477865.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 82x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477865.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:33:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,594
            CDSs (total)                      :: 5,468
            Genes (coding)                    :: 5,350
            CDSs (with protein)               :: 5,350
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 43 of 118
            Pseudo Genes (incomplete)         :: 65 of 118
            Pseudo Genes (internal stop)      :: 21 of 118
            Pseudo Genes (multiple problems)  :: 9 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126046.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="184"
                     /db_xref="taxon:573"
                     /plasmid="unnamed5"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            complement(432..1421)
                     /locus_tag="P4G11_RS27965"
                     /old_locus_tag="P4G11_27945"
     CDS             complement(432..1421)
                     /locus_tag="P4G11_RS27965"
                     /old_locus_tag="P4G11_27945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_040207214.1"
                     /translation="MQNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDSRWMFLTLTVRNCAIEELGETLSRMNTAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPKWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVKKYRRSPTKDKTESD"
                     /name="protein rep"
     gene            complement(1745..1936)
                     /locus_tag="P4G11_RS27970"
                     /old_locus_tag="P4G11_27950"
     CDS             complement(1745..1936)
                     /locus_tag="P4G11_RS27970"
                     /old_locus_tag="P4G11_27950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020324555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_020324555.1"
                     /translation="MIVRLDNRLFEILDEMGAHVDREMFMAAYAQRKAEKENDPRHIRQ
                     RKLTRLAHDLMSESDPEL"
                     /name="hypothetical protein"
     Typing          515..706
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.446"
                     /coverage="100.0"
                     /evalue="2.86e-91"
ORIGIN
        1 cgggaccccg cgatttagcg tttgacgatt tcgggaacgg cgaacgctga cagattttaa
       61 tctggcggcg tgaggtgttg gcagggtgtc ggggcgcagc cctgacggat cgtttttggt
      121 accggcatcg tgatggcggt actccaaaaa cacatcttgt ccgttatcag tttttgtttt
      181 tcgtgggctt gccccaccgc gcgtttctca tcgccagatg agaaactact aagcgcgcct
      241 tccggaaaat taccggaaga aaaacccagg ttcggaatcc gaactcagta atcgagtgac
      301 gtcactttgc ggcgttagcc ctatcctgca tcggagtaaa atcaatcgga caagatgtga
      361 ctttggtaca ccgccaccaa ggtgacggat gcccaaagcc ctcatggtca gggcgcagcc
      421 ccgacaccct gttagtctga ttcggtttta tctttcgtcg gcgaacgccg gtactttttg
      481 acctcggtct tccactcgaa cgcgatgcgg gaaccgtcat catcgccctc ggaaatatca
      541 tccccgatca ccatgtcggc gtcggtttcc tgatcgagtt tcagcacgtc tttgagtgcg
      601 ccgccggtcg ccacaaagcg gcgcttgtgc gtctggcggg tcagttcgag gaaccattta
      661 ggatcggcca ccatgtcggc cggcttcgtg gaatatttca gggtttcggc cactgcgccg
      721 cgcaccagtt cggcggtcgc gcaggccagc gattcgccgt ccttcggctt gcggggtttc
      781 actgcccgga catcgacatt cggatcgtaa ctgacccgca ggcactcacg ccacagctca
      841 acccagcgtt catgcctgac gtaactcttc ccgttaagca tgcccggcgg aaccatcatc
      901 agggtgtgga agtgcgggtg tgcgctgccg tcactgccgc gggtgacttc cgtggtgcgt
      961 atccagccct gaactggtcg gaactcttta cggtccttca gtcgctggaa agccgtgttc
     1021 atccggctca gcgtctcgcc cagctcctcg atcgcgcagt tgcgcacggt cagggtcaga
     1081 aacatccagc gggaatcggg gtaatccgcc acgatacgcg gcagggactg gtagaaacgg
     1141 gcttgccaca tcagggagcg cctccactgg cagacaggac agtgccggac acggcagaaa
     1201 tgcgcctcac gcagcctcag gcgcgtttct ccggtttctt tgagggtaga ccacccaaac
     1261 ctcagtaaac cgccacagga ggccatacgc gccccgtagc gctcatattc agccgcaagc
     1321 aggtaaatcc ctcccacgtc gtcagaaacg cttctgtgag cgtcccacgg cgcatctgag
     1381 ggggagtagt cagttaggtt ctggagttca ggattttgca tgcacaccgc cccatgctgg
     1441 gcgatggctc atttgacgtg ttatcattgc catatcacct gtgttgtcgt gtccaaattc
     1501 gaattcctac aggtggtcac acccccgaac tgttagcgca gttgcggggg tcgctttttt
     1561 ctgcgaccac tcccgacaga atacttccaa aaccattttc aggcaaatca cactcaaacc
     1621 cttgcggcac aagggctggc ggcgtttttt gacgccagag ttatccctta agtataaata
     1681 caaggatcgc gcgcacgaga ctccggccat tttctgaccg atttccctcg cgcgcacgcg
     1741 aggctcacaa ttcagggtcc gattctgaca tcaaatcatg agccaacctg gtcagtttcc
     1801 gttgacggat atgccgggga tcattttctt tttcggcctt ccgctgcgca taggccgcca
     1861 tgaacatttc ccgatccaca tgcgcaccca tctcatcgag aatctcaaac agccggttat
     1921 ccagtctgac gatcatgcct accccctcaa aaaacgctta tcaggtggtt gcgctcactg
     1981 cgtgatcaca accaccccct gtaagtattt tacgggtgct gtcgtcaatc actaaatcgg
     2041 aacccactgg caagccag
//
