LOCUS       NZ_CP126044             5010 bp    DNA     circular CON 05-APR-2024
DEFINITION  Klebsiella pneumoniae strain 184 plasmid unnamed3, complete
            sequence.
ACCESSION   NZ_CP126044
VERSION     NZ_CP126044.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790401
            Assembly: GCF_037477865.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5010)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-MAY-2023) Laboratory of mathematical biology and
            bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 82x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_037477865.1-RS_2024_04_05
            Annotation Date                   :: 04/05/2024 19:33:39
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,594
            CDSs (total)                      :: 5,468
            Genes (coding)                    :: 5,350
            CDSs (with protein)               :: 5,350
            Genes (RNA)                       :: 126
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 118
            CDSs (without protein)            :: 118
            Pseudo Genes (ambiguous residues) :: 0 of 118
            Pseudo Genes (frameshifted)       :: 43 of 118
            Pseudo Genes (incomplete)         :: 65 of 118
            Pseudo Genes (internal stop)      :: 21 of 118
            Pseudo Genes (multiple problems)  :: 9 of 118
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP126044.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5010
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="184"
                     /db_xref="taxon:573"
                     /plasmid="unnamed3"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            join(4279..5010,1..174)
                     /locus_tag="P4G11_RS27905"
                     /old_locus_tag="P4G11_27885"
     CDS             join(4279..5010,1..174)
                     /locus_tag="P4G11_RS27905"
                     /old_locus_tag="P4G11_27885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_019725130.1"
                     /translation="MHNAALELFNERLPHKPYFSDDLHFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRAGSSIDWSDRNAPAPTLTITNPENGHAHLLYALENSIRTAPDGKIK
                     PLRYAASVENALRKKLEADAGYSGLICKNPNHNHWKIAVWQPKLYTLDWLADFLDLNTG
                     NDKEIVADYGLGRNCTLFDKTRKWAYRAIRQGWPEYEQWLQACYERACAYNLQFARPLD
                     ENEVRGIAKSIAKWTSNKFSPEEFSKFVDITHSSEIQSKRGKKSGQSRRKGSLEEIKPW
                     VAMGISRRKYFYIKKNGEIR"
                     /name="replication initiation protein"
     gene            171..878
                     /locus_tag="P4G11_RS27910"
                     /old_locus_tag="P4G11_27890"
     CDS             171..878
                     /locus_tag="P4G11_RS27910"
                     /old_locus_tag="P4G11_27890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001258875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004198042.1"
                     /translation="MKTFVTLWTIVFLAFIAVMCTVDISNYIPSVYTVFSKNRPLVTGA
                     LSILLISVFIWLMVSLYLLKKYSVKVEKLSLGGVNILFNESATLYKKSVKNHLDSKRAI
                     FKLRKNVDAFDEVISSYYQTYQFIRDEMKILNPKKDREIYDFSNEMLMVLNRFLTNYQN
                     NYKRWYKYISDKDEVVDRVSGDVMRFHATSINKIQMQYYDYERILKGFKDVNRFFVNDV
                     KPKFGINTDKWNW"
                     /name="hypothetical protein"
     gene            complement(915..1529)
                     /locus_tag="P4G11_RS27915"
                     /old_locus_tag="P4G11_27895"
     CDS             complement(915..1529)
                     /locus_tag="P4G11_RS27915"
                     /old_locus_tag="P4G11_27895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012822468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="WP_019725132.1"
                     /translation="MGKHKVFISYHHANDQYYKNALEKMNEEHEIFVNRSVSLGDIDED
                     EAPQKIREIIRDEYLRDTSVLILLVGTETKNRKHVDWELYSSMRDSTINKKSGILVVNL
                     PSTNTTYIRSTHGTNEKSEVHPTVTEWFSIDKRSTYEERFPYMPARIIDNFMKSGSYIS
                     VVNWNQIENNPETLRKLIDMTYNDREKATYDMSREMRMHNS"
                     /name="TIR domain-containing protein"
     gene            1931..2332
                     /locus_tag="P4G11_RS27920"
                     /old_locus_tag="P4G11_27900"
     CDS             1931..2332
                     /locus_tag="P4G11_RS27920"
                     /old_locus_tag="P4G11_27900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_019725133.1"
                     /translation="MTRVSISEAARLTGKSRTTLHRLIKTGELSTCSGERNTKMVDISE
                     LLRVFGPFDQPKNEHLTRQVPEQRDTAPADQSEHVIRQLKQQIEHLNILILSKDSHIDS
                     LKQAMLLLENHQAKLTEPPAPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(3132..3293)
                     /locus_tag="P4G11_RS27925"
                     /old_locus_tag="P4G11_27905"
     CDS             complement(3132..3293)
                     /locus_tag="P4G11_RS27925"
                     /old_locus_tag="P4G11_27905"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_162870772.1"
                     /translation="MAKHWSGQECPKTGTYGQYHDTDNSYAGSEYDRHVSKGDKFPPSK
                     NNHHFQEK"
                     /name="hypothetical protein"
     gene            3530..3775
                     /locus_tag="P4G11_RS27930"
                     /old_locus_tag="P4G11_27910"
     CDS             3530..3775
                     /locus_tag="P4G11_RS27930"
                     /old_locus_tag="P4G11_27910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012848468.1"
                     /GO_component="GO:0110001 - toxin-antitoxin complex
                     [Evidence IEA]"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0097351 - toxin sequestering activity [Evidence IEA]"
                     /GO_process="GO:0045927 - positive regulation of growth
                     [Evidence IEA]; GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="WP_025987695.1"
                     /translation="MHAINFTDARKHFAETMKRVTDDAEPVRVMRRDAPDIVMIDAGEY
                     EALIETVYLFSNPANAEHINESMKQAERGEFVEVEY"
                     /name="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
     gene            3756..4031
                     /locus_tag="P4G11_RS27935"
                     /old_locus_tag="P4G11_27915"
     CDS             3756..4031
                     /locus_tag="P4G11_RS27935"
                     /old_locus_tag="P4G11_27915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017412855.1"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="WP_019725129.1"
                     /translation="MSKWNIKFTRNGADDLNYWRDTDKKKFERIRQLLLSIEADPLTGI
                     GKPERLRHHKDPALYSRRIDQSHRLVYSIQNGEIIIYAARYHYGDK"
                     /name="Txe/YoeB family addiction module toxin"
ORIGIN
        1 gaattcagta aatttgttga tattactcat tcctctgaaa ttcaatcaaa gagagggaaa
       61 aagtcaggac agtcaaggag gaaaggaagc ctagaggaaa taaaaccttg ggtagctatg
      121 ggaataagca ggcggaagta tttttatatc aagaaaaatg gtgaaataag atgaaaacct
      181 tcgtaactct ttggactata gtttttttag catttattgc cgtgatgtgt actgttgata
      241 tatctaatta cattccgtct gtttacacag tttttagtaa gaatagacct cttgtaactg
      301 gcgccctttc tattcttttg atatctgttt ttatttggct gatggtatcc ctctacttac
      361 ttaaaaagta ttcggttaag gttgagaaac ttagccttgg tggagtgaat atacttttca
      421 atgagagtgc tacactttac aaaaagagtg taaaaaatca cctagattca aaaagagcaa
      481 ttttcaaatt aagaaaaaac gttgatgcct ttgatgaggt tatttcatca tattatcaga
      541 cttaccaatt tattcgtgat gaaatgaaaa tactaaaccc taaaaaagat cgtgagattt
      601 atgatttcag caatgagatg ctcatggtgt taaatagatt tctaactaac taccagaaca
      661 actacaagcg ttggtataag tacatatcag acaaagatga ggttgttgat agggttagcg
      721 gtgatgtcat gagatttcat gcaaccagca taaataaaat acaaatgcag tattatgatt
      781 atgagcgtat tttaaaaggt tttaaagatg ttaaccggtt ctttgttaat gatgtgaagc
      841 ctaagtttgg aatcaataca gataagtgga actggtaaat taaaggagta gccaaggcta
      901 ctccttggat agtactatga attatgcatt ctcatttctc tcgacatatc atacgttgct
      961 ttttctctat cgttataagt catgtctatt aattttctga gtgtttctgg gttgttttct
     1021 atttgattcc agttgaccac tgatatataa gacccgctct tcatgaagtt gtctattatt
     1081 cttgctggca tatatgggaa cctttcctca taagttgagc gcttatcaat agaaaaccat
     1141 tcagttacgg taggatgaac ttctgatttt tcattagttc catgtgttga acgaatgtac
     1201 gtagtatttg ttgacgggag attgacgact aaaattcctg attttttgtt aatggtacta
     1261 tctctcatgc tagagtaaag ttcccaatct acgtgttttc tgttttttgt ttcagttcca
     1321 acaagaagga taagaactga tgtatctcta agatattcat ctcttattat ctctcttatt
     1381 ttttgtgggg cttcatcttc atctatatca cctaatgata ctgagcgatt cacgaatatt
     1441 tcatgttcct cattcatttt ttcaagtgcg tttttgtagt actgatcatt cgcatggtgg
     1501 tagctaatga ataccttatg ctttcccatt tttattgtcc tttttttgtt tgtgtgcact
     1561 ctattttgca cttgaaccta tatcagataa cagctctctt ttagagagct ctttttttct
     1621 cagccagcac acatagggtc ccttcagcaa ggtctcgcca tgactggttt agggcgggct
     1681 cgttgcttcc ctaaacgcct tgagaagaga gctatcacct cactttattc ttacgtaccg
     1741 ctcgccgcag tcttatgacc gaacgtagtg agcgaatgcg cgaggaagcg gaaagtcatt
     1801 tgttgcctgc attttgcacg gtcactcctg tgtttcatcg cccttctgaa aaacacatca
     1861 cttctggacc agtatgtcgt aagctggccc ctgtttcctt gagactgaat gtattaaagg
     1921 atgataactg atgaccagag tgtctattag tgaggctgca cggctgacgg gtaagagccg
     1981 gacaacgctg cacaggttaa tcaaaacagg tgaactgtcc acttgtagcg gtgaacgaaa
     2041 tacaaaaatg gtcgatatat cagagctttt acgtgttttc ggaccgtttg accaaccgaa
     2101 gaatgaacac cttactcgac aagtacctga acagcgtgat acagcgcctg ctgaccagag
     2161 tgaacatgtc attcgtcaac tgaaacagca gattgaacac cttaacatat tgattttatc
     2221 gaaggattcg cacattgaca gcctgaaaca ggccatgctc cttcttgaaa atcaccaggc
     2281 aaaattaact gaacccccgg cgccgtggtg gaaattctgg aaaaaatcct gaccccgtca
     2341 tgcttcagtt ttcctctccg gccattccgg ggagttcctg aaccttcccg aaaatcgtca
     2401 gatctctgaa cgctcctcac cacgaaaaat acccacaccc cacgcaaaat tttaattttg
     2461 cagatttgta tttaatatca gcagcttact ttactgaaat ttcgtttttt aaattttatt
     2521 tatatagatc cgactctatg acgagtcgtc atagagtccc cggcgagtcg tcatagagtc
     2581 ggtaacgact caggcctata aaaacaatga gttaataacg acccgactct agatccgact
     2641 ccccgtttgg ttgtttttta gacgtggcga ctctgggtac gactctagtg aagagtcgcc
     2701 ggggaatcgt gtggtgagtc gtccggcgac ttgccataac gtgattgccg gccgtggacg
     2761 aaccgattcc tgaacgtgct gaaaaccggt tttccggctg cgccggcaac gcttcacggc
     2821 cacgcaataa attgcgtccc cgttcaccgt tttcggatgg gaagaacgcc ggaaacagga
     2881 cttcccctgg ctgaatggtg tcaatttccg cgctatgcac ttgtgcgcat actcatgcat
     2941 gccgtaaaaa cagagcctgc gcgtttctgg cgggttttcg ggtggtttgt tgccttgttt
     3001 accggtttcc cgtcagaaac gccctgaggg catctcaggc ggtgctgata acggatgtta
     3061 tggtaaatca agtgaatggc aggtacaaaa aaagccccag agggctttta gtttagactt
     3121 ctgaagatat tttatttttc ttggaagtgg tggttgtttt tgctcggagg gaacttatca
     3181 cccttgctca catggcgatc atattcagaa ccagcgtatg agttgtcggt atcatgatat
     3241 tgaccgtaag tacctgtttt tggacattct tgcccagacc aatgttttgc catttacttt
     3301 tcctttgctc gttttaggag ctaagctcct agcggtacga aattgtgccg cacttcataa
     3361 atgtaattgc ttgaaattat gcttcaatgt attgacttgt tgtttttgtg gttattcgat
     3421 tgagttcaca ttttgagctg atttggttgt gggtttttag ggaaatatct ttatgtactt
     3481 atttgcgtac atgttctatg ctaagcccca acaaatgggg gttaacaaca tgcatgcaat
     3541 caattttact gatgcccgta aacattttgc cgagacgatg aagcgcgtca ctgatgatgc
     3601 tgaaccggta cgtgtcatgc gccgtgatgc gcctgatatt gttatgatcg atgcgggaga
     3661 gtatgaggcg ctaatcgaaa cggtctatct gttcagcaat ccggcgaacg cagagcatat
     3721 caatgagtca atgaaacagg cggagcgcgg cgaatttgtc gaagtggaat attaagttca
     3781 ctaggaatgg cgctgatgac cttaactact ggcgtgatac tgacaaaaag aagtttgagc
     3841 gtatccggca actgttgctc agcatcgagg ctgatccgct gacaggtata ggaaaacccg
     3901 aacggctgcg gcaccacaaa gatccggcac tctactcccg caggattgat cagagccacc
     3961 gtctggtcta ttcaatccag aacggagaaa tcatcatcta cgcagcccgt tatcactatg
     4021 gtgacaaata gcaaaagtcg atatagcccg cttgatgcgg gcttttcatg caaggcgtac
     4081 aacggatgtt agggtaagtc gctgtcagat cgacacaaag gcaaagtcgg tgtaacgtta
     4141 gcctcagaaa aaacaaagcc ccggaaatca tgtcatatct tggcggatcg catgataacc
     4201 agggctaggt cgaaaccttg aaaggatatt agcacatgaa ccgtgccaga caacagcccg
     4261 ccataagcgc agggcacatt gcataacgcc gcactcgaac ttttcaacga acgcttacca
     4321 cacaagccgt acttttcgga cgatctgcac tttggtgtcc gtatcgccgg taaggaacgc
     4381 gctattctgg cgaaatatat ccagttcaat cagcctcacg ccatgttctg gctgggattt
     4441 gacgttgacc gcgccggttc ctccatcgac tggagcgacc gcaacgcgcc tgcaccgacg
     4501 ctgaccataa ctaaccccga aaacggacac gcgcacctgc tgtacgcgct ggaaaactcg
     4561 atacgcaccg cgccggacgg caaaataaaa ccgttacgct acgccgcctc cgtggagaat
     4621 gcgctacgta aaaaattaga ggctgacgct ggatattcgg ggctcatctg caaaaatccg
     4681 aaccacaacc actggaaaat cgccgtgtgg cagccgaagc tctacactct ggactggctg
     4741 gccgactttc tcgatctgaa cacagggaat gacaaggaaa tcgttgccga ctacggctta
     4801 ggccgtaact gcacgttgtt cgacaaaacc cgtaagtggg catatcgcgc catccgtcag
     4861 ggctggcctg agtatgagca gtggctgcaa gcctgctacg aacgcgcttg cgcatacaac
     4921 ctgcaatttg cacggcctct ggatgaaaat gaggtaagag ggatagctaa gagcattgct
     4981 aaatggacat caaataaatt ttcacctgaa
//
