LOCUS       NZ_CP125357             1546 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Escherichia fergusonii strain XJ19MCE1 plasmid pYUXJMC1-7, complete
            sequence.
ACCESSION   NZ_CP125357
VERSION     NZ_CP125357.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34575413
            Assembly: GCF_030035445.1
KEYWORDS    RefSeq.
SOURCE      Escherichia fergusonii
  ORGANISM  Escherichia fergusonii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1546)
  AUTHORS   Wang,J.
  TITLE     Complete sequence of mcr-1-positiveEscherichia fergusonii XJ19MCE1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1546)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2023) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: non-hybrid Hierarchical Genome Assembly Process
            v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: PacBio single-molecule real-time sequencing
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030035445.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 05:12:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,999
            CDSs (total)                      :: 4,879
            Genes (coding)                    :: 4,696
            CDSs (with protein)               :: 4,696
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 66 of 183
            Pseudo Genes (incomplete)         :: 90 of 183
            Pseudo Genes (internal stop)      :: 42 of 183
            Pseudo Genes (multiple problems)  :: 13 of 183
            Pseudo Genes (short protein)      :: 1 of 183
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125357.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1546
                     /organism="Escherichia fergusonii"
                     /mol_type="genomic DNA"
                     /strain="XJ19MCE1"
                     /isolation_source="chicken meat"
                     /db_xref="taxon:564"
                     /plasmid="pYUXJMC1-7"
                     /geo_loc_name="China: Xinjiang"
                     /lat_lon="42.45 N 86.37 E"
                     /collection_date="2019"
                     /collected_by="Yan Wang"
     gene            83..559
                     /locus_tag="QKW25_RS24675"
     CDS             83..559
                     /locus_tag="QKW25_RS24675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000469298.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_000469298.1"
                     /translation="MFIDSEKRLKQLSDEAKKNTEDLEEAKKNSRFTQVSPKGWERVRE
                     LLKDSQGISALKLYSFLAEHIDPTCGAVVADQQFLAEKLGVSRSTIIRWLNYLESKNAL
                     VRIPVAGKVCAYALDPHEVWKGYNTTKNHAAFVTKTLVNKDGDIQRRIMAMFSN"
                     /name="helix-turn-helix domain-containing protein"
     Typing          1164..1245
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          complement(1442..1546)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="96.0"
                     /evalue="3.2699999999999995e-48"
     Typing          complement(792..1049)
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="95.0"
                     /coverage="99.0"
                     /evalue="3.93e-111"
ORIGIN
        1 caacaaggtg ttgcacagat gtgtcatgat ggcttagatt tgaaccaacg ttagtgcatg
       61 ggattttcag agggaaaaaa tcatgtttat tgattcagaa aaacgactga aacaactttc
      121 agatgaggca aagaaaaaca ccgaggatct cgaagaagca aagaagaatt caaggtttac
      181 acaggtatcc ccaaaaggtt gggaacgcgt tcgagagctg ctgaaggata gtcaaggcat
      241 atcagcactg aagctgtact catttttagc ggagcatatc gatcctacgt gtggcgctgt
      301 cgttgcggat cagcaattcc tagctgaaaa acttggagtt agcagaagca caattattcg
      361 gtggctcaat tacttagaat caaaaaatgc attagttaga atccccgttg ctggtaaggt
      421 ttgtgcgtat gccctcgatc cacatgaagt ctggaaggga tacaacacta cgaaaaacca
      481 tgcagcgttt gtcactaaaa cactggtcaa caaagacggt gatattcagc gccgaatcat
      541 ggccatgttt tcaaattgag ccagcggcag gcggacaatc aggggctacg tgttaacgtt
      601 ttgaccatga ttgtctatcc tgcattgctc ttttgccgcc tcaaaatccc ttgcgtgttt
      661 ttgctccccg atccccagaa cgaccgcgcc gccacggttc cggcagcgcc ttgagcgcaa
      721 ccggaaaccg tctggggaga accccagacc cccatcgctg taacaccgac ggtctacgac
      781 caccaaccag ccgaatagct gcctgtgccg tgcaaatagg ctttgcaggg agctgacgcg
      841 gttcctagcg acctgaaagc ccctggttag gggtatcggc gcgcctgacc tcctgagagc
      901 ctctgtaagc gtttttcgcg ccttccatgc cctggcgggc atttaaaccc gtttcgtgcg
      961 tctgagagct tctgagcgtg tttgaagggc tatctgacga ctcatccccg aaagaacaac
     1021 aacgggatca ccgacaacat acgagaggtg atcccgctcg ccgcaagtcg atgaccgagc
     1081 gtagcgagcg aatcgacgag gaagcggaag agaaccggaa gttacattga gcacttacgc
     1141 acggatgcgg ggtgtcgggg tgaagccctg accaggtggg gaatgtctga gtgcgcgtgc
     1201 gcggtccgac attcccacat cctgtcccga tttctgaggc gttttaacgg tgaacggacg
     1261 gcaaaaacat gatcgagctg ttgaacgtgg agagcgcgaa atcgggcaaa atcacggctg
     1321 acgaggcttg cagaggagta agccagtata cactccgcta tcgctacgtg actgggtcag
     1381 ggcttcgccc cgacacccca aaagggcgtt gcgttgcgcg caacaccctt gcctagaata
     1441 gatcttttac gccgatttgt aagttgttgt ttttttagtg tgttttttgt ttacctgtcg
     1501 catccagggt gacacaacgt tgtcgcatcc tggatgcgac aacacg
//
