LOCUS       NZ_CP125356             1888 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Escherichia fergusonii strain XJ19MCE1 plasmid pYUXJMC1-6, complete
            sequence.
ACCESSION   NZ_CP125356
VERSION     NZ_CP125356.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34575413
            Assembly: GCF_030035445.1
KEYWORDS    RefSeq.
SOURCE      Escherichia fergusonii
  ORGANISM  Escherichia fergusonii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Wang,J.
  TITLE     Complete sequence of mcr-1-positiveEscherichia fergusonii XJ19MCE1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2023) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: non-hybrid Hierarchical Genome Assembly Process
            v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: PacBio single-molecule real-time sequencing
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030035445.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 05:12:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,999
            CDSs (total)                      :: 4,879
            Genes (coding)                    :: 4,696
            CDSs (with protein)               :: 4,696
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 66 of 183
            Pseudo Genes (incomplete)         :: 90 of 183
            Pseudo Genes (internal stop)      :: 42 of 183
            Pseudo Genes (multiple problems)  :: 13 of 183
            Pseudo Genes (short protein)      :: 1 of 183
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125356.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Escherichia fergusonii"
                     /mol_type="genomic DNA"
                     /strain="XJ19MCE1"
                     /isolation_source="chicken meat"
                     /db_xref="taxon:564"
                     /plasmid="pYUXJMC1-6"
                     /geo_loc_name="China: Xinjiang"
                     /lat_lon="42.45 N 86.37 E"
                     /collection_date="2019"
                     /collected_by="Yan Wang"
     gene            547..783
                     /locus_tag="QKW25_RS24665"
     CDS             547..783
                     /locus_tag="QKW25_RS24665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001676031.1"
                     /translation="MNRLTNLTPAEKKFLDDAIAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSEFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            complement(1625..1738)
                     /locus_tag="QKW25_RS24670"
     CDS             complement(1625..1738)
                     /locus_tag="QKW25_RS24670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001517211.1"
                     /translation="MHEPPVQSDCCACSGNYRLESNPERHAKAPLAAATGN"
                     /name="hypothetical protein"
     Typing          complement(2..225)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.333"
                     /coverage="80.0"
                     /evalue="1.68e-88"
     Typing          complement(1423..1888)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.282"
                     /coverage="93.0"
                     /evalue="1.36e-133"
ORIGIN
        1 tctttaagtc ctgtcgggtt tcgccaccac tgatttgagc gtcagatttc gtgatgcttg
       61 tcaggggggc ggagcctatg gaaaaacggc tttgccgcgg ccttatggtt tccctgttaa
      121 gtttcttcct ggcatccact aggaaatttc cgccccatta gtaagcctgc accgctcgcc
      181 gcagccgaac gaccgagcgg agcgagtcag tgagcgagga agcggcattt ctccggcagt
      241 gcatcttctg ctgacgcata cgaatctcat ttttcacctg ctttatgtgg cagctatgcc
      301 tgatgtttct gcgatgttac attttaagcc agtatacact ccgctagcgc tatgtgactg
      361 gttcagggct gcgccccgaa acccgctaaa accactgacg cgcctgcggc ttgcccaacg
      421 tctcacgtca ccggattaaa atccgctccc gttcaccgtt tctggctgtc tttcagcacc
      481 gccagcgctt catcggttct gctgtgtctg gcagactgtg cggagttatt ctgacgggag
      541 aatgctatga acagactgac aaacctgaca cctgcagaga aaaaatttct tgatgatgct
      601 attgccgcag ctgagagagc gtcaggcaaa aagctaaatc agccgaaccg gcatatcgtc
      661 ctgaacagag cgcgtgcgca gattgagtcg cagcgttacg ccgaccgcca gcgtgcatta
      721 cgtgaggatg agcggcagca gtccgagttt gcctggtcac gtccgcgcgc gccgcgccgc
      781 tgattgcgcc ttttggcggt ttagtggtgc tgacactccg aaatcgtctg ccattcaccc
      841 gcgtgcatag ccatgcagtc gcgcagaaat catcaggtgc gtttttcagg gttatggcca
      901 gggaaaggtg ctggaaatgg ctaactcgtt acagagtggc gctgagggcc tctcaggcgg
      961 tgcgggcaac ggatgttatg gtaaatagag cgttttggtg actcgcccgc cacatcttta
     1021 gctgtgatat aattttacag aaggatgaaa gggcaaaaaa aaagaatccg taaggattct
     1081 ttttctcgcc tcagtcagcg actgcgaatc gctgactgct acccgaaaac atgtaccgaa
     1141 gctcacgttg tcgttactta tcacaaagta attttacccc tggggtgaat ctacgtcaat
     1201 tgagccggta ttcctttcta tcaatatgaa ggaataaacg tatggccgaa ctgcttacgg
     1261 cgtttattaa agcaccactt ataagccagg tgctgaccat cattctgtgt ctgatctttg
     1321 tagtacacag tcttttaaat tgatgtacca cccataaaaa aagccactta tgtggctttt
     1381 tttatgaatc gagagatagg tatctgttga atatcacaga tgatcttctt gagatccttt
     1441 tcgttgcgtc gtaatctctt gctctggaaa cgaaaaaaac cgcccagcaa ggcggttttt
     1501 cgaaggttct cagagcagca actctttgaa ccgcggtaac tggcttaaga ggagcgcagt
     1561 aaccaaatct gtcctttcag tttagcctta actggcacat aacttcaaga ctaactcctc
     1621 taaatcagtt accagtggct gctgccagtg gcgcttttgc atgtctttcc gggttggact
     1681 caagtcgata gttaccggaa caggcgcagc agtcggactg aacggggggt tcgtgcatac
     1741 agtccagctt ggagcgaact gccttcccgg aactgagtgt caggcgtgga atgagagacc
     1801 gcggccataa cagcggaatg acaccggtaa accgaaaggc aggaacagga gagcgcacga
     1861 gggagccacc agggggaaac gcctggta
//
