LOCUS       NZ_CP125355             3830 bp    DNA     circular CON 18-MAY-2024
DEFINITION  Escherichia fergusonii strain XJ19MCE1 plasmid pYUXJMC1-5, complete
            sequence.
ACCESSION   NZ_CP125355
VERSION     NZ_CP125355.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN34575413
            Assembly: GCF_030035445.1
KEYWORDS    RefSeq.
SOURCE      Escherichia fergusonii
  ORGANISM  Escherichia fergusonii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 3830)
  AUTHORS   Wang,J.
  TITLE     Complete sequence of mcr-1-positiveEscherichia fergusonii XJ19MCE1
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3830)
  AUTHORS   Wang,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2023) Key Laboratory of Prevention and Control of
            Biological Hazard Factors (Animal Origin) for Agrifood Safety and
            Quality, Ministry of Agriculture of China, Yangzhou University,
            No.48 Wenhui East Road, Yangzhou, Jiangsu 225009, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: non-hybrid Hierarchical Genome Assembly Process
            v. 4
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 100.0x
            Sequencing Technology :: PacBio single-molecule real-time sequencing
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_030035445.1-RS_2024_05_18
            Annotation Date                   :: 05/18/2024 05:12:11
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,999
            CDSs (total)                      :: 4,879
            Genes (coding)                    :: 4,696
            CDSs (with protein)               :: 4,696
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 91
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 66 of 183
            Pseudo Genes (incomplete)         :: 90 of 183
            Pseudo Genes (internal stop)      :: 42 of 183
            Pseudo Genes (multiple problems)  :: 13 of 183
            Pseudo Genes (short protein)      :: 1 of 183
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125355.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3830
                     /organism="Escherichia fergusonii"
                     /mol_type="genomic DNA"
                     /strain="XJ19MCE1"
                     /isolation_source="chicken meat"
                     /db_xref="taxon:564"
                     /plasmid="pYUXJMC1-5"
                     /geo_loc_name="China: Xinjiang"
                     /lat_lon="42.45 N 86.37 E"
                     /collection_date="2019"
                     /collected_by="Yan Wang"
     gene            complement(join(3789..3830,1..108))
                     /locus_tag="QKW25_RS25010"
     CDS             complement(join(3789..3830,1..108))
                     /locus_tag="QKW25_RS25010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_077464408.1"
                     /translation="MHEPPVQSDCCAFSGNYRLESNPERHEKSPLAAATGKQDVREMYR
                     EFLK"
                     /name="replication initiation protein"
     gene            853..1053
                     /locus_tag="QKW25_RS24650"
     CDS             853..1053
                     /locus_tag="QKW25_RS24650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001046776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016236520.1"
                     /translation="MNLCPDERLLFVRMISAMLRRSGGDAGAVMFEAYRHIVSDTNQAR
                     RSCMLDLLESVRHDYVHGGYT"
                     /name="hypothetical protein"
     gene            complement(1101..1289)
                     /locus_tag="QKW25_RS24655"
     CDS             complement(1101..1289)
                     /locus_tag="QKW25_RS24655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165998.1"
                     /translation="MTKQESAALNMAKFIRAQSLLLLEKLDVLDLDDEAADCERMHEQA
                     EALYQKLSARFGIQDGE"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1579..3483)
                     /locus_tag="QKW25_RS24660"
     CDS             complement(1579..3483)
                     /locus_tag="QKW25_RS24660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003839290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="WP_052895204.1"
                     /translation="MSWAYRISMQMKLFIALFPLLLALVWFAGSGIVSRINTEQQMNTI
                     GQLTTLARSAGDVVHQLQSERGMSAGFIGARGQKFRDDLAAQRQLTDKVLATFKRLLTD
                     TNKDLLQGNIAAPLKTFNESIQFLDSTRTAISELTIDSPKASQFYTQTISDVLKFVGGM
                     GHLSTSGSMVNELAAYYSLLNLKEQAGVERALLSNIFSMDRFDDGQFSMFSDVVGQQDA
                     WLTAARSFSTPVQAAELDKSLQSAEATRALELRETAFNKAAEGGFGVNPTDWFNLQTQR
                     IETLQKVENRAVDALQEHAALLAHNARVDWQSFLVISLVALLIAIAFAVMVARSIQQQL
                     NGTLKTIAEMDGDLTRRLDVPGSDELSALNRAYNQAIENIQHIVQEIKSGAVVLRSASS
                     DIAAGNQDLAQRTDEQAASIVETAASMEQISTAITQTADNASEAERLIHSMERDVLEAN
                     RVSNEASQSMAEIRSSSEQISQIVASIDEISFQTNLLALNAAVEAARAGELGKGFAVVA
                     TEVRNLSQRCAREASQIRELINQNMDKIGEGVARVTASGTALKAAAENTGRMKQYVSDI
                     ARAANEQSLGVSQVHQALNQLEQVTQQNAALVSQAASASQMLDGQSEAMSTLVDRFIV"
                     /name="methyl-accepting chemotaxis protein"
     Typing          471..643
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.701"
                     /coverage="100.0"
                     /evalue="4.2800000000000005e-79"
     Typing          complement(2..546)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.066"
                     /coverage="90.0"
                     /evalue="0.0"
ORIGIN
        1 accagtggcc gctgccagtg gcgatttttc gtgtctttcc gggttggact caagacgata
       61 gttaccggaa aaggcgcagc agtcggactg aacggggggt tcgtgcatac agtccagctt
      121 ggagcgaact gccttcccgg aactgagtgt caggcgtgga atgagataaa cgcggccata
      181 acagcggaat gacaccggta aaccgaaagg caggaacagg agagcgcacg agggagctac
      241 cagggggaaa cgcctgggat ctttatagtc ctgtcgggtt tcgccgccac tgatttgagc
      301 gtcagatttc gtgatgcttg tcaggggggc ggagcctatg gaaaaacggc ttcgccgcgg
      361 ccttaccgtt tccctgttaa gtttcttcct ggcatctccc aggaaatttc cgccccattc
      421 gtaatcccgc accgctcgcc gcagccgaac gaccgagcgc agcgagtcag tgagcgagga
      481 agcggaatat atcctgtatc acatattctg ctgacgctcc gctgctgcat ttttctcctg
      541 ccacatgaag cacttcactg acactcgcat ccgtgccaac atagtaagcc agtatacact
      601 ccgctagcgc tacgtgactg gttcagggct gcgccccgac acccgctaaa agcactgacg
      661 cgcctgcggc ttgcccaacc ccgcgccgtc cgggaaagaa tttcccgatc gacccgacgt
      721 ttctgtttac ctgtgatgtt aacgtttgga tctttttccc gggtttacct attttaatga
      781 agcgtaatga agcgttcaca gctgacgtta atagatgggt gcttcatgtt tggtttttca
      841 ccaggagaac ttatgaacct ttgccccgat gaacgtctgc tctttgtgcg gatgatttcc
      901 gctatgcttc gccgttcggg cggtgatgcg ggtgctgtta tgtttgaggc gtatcgccat
      961 attgtgtccg ataccaatca agctcgtcgt tcctgcatgc tcgacctgct cgaaagcgtc
     1021 aggcatgact atgtacacgg tggatataca tagttgccct ggatacgctt ttcgtctaag
     1081 tgagcgttct tttcgtctct ttattcgccg tcctgtatac cgaagcgtgc gctcagcttc
     1141 tgataaagcg cttctgcctg ttcgtgcatt cgctcacagt cggctgcctc gtcatcaaga
     1201 tcgagcacgt cgagtttttc gagcagcagc agcgactgcg cccggataaa ttttgccatg
     1261 ttcagtgcgg ctgattcctg ttttgtcata cggctttttc ccggttttat ggtgatcgca
     1321 gactgaaatc ttacttcatt cacttgagtg catagccatg caggtacgca gaaatcatca
     1381 ggggcgtttt ttctcgatat gggcacagaa aggtgtatgt ttcaggtcgg agtcctcaga
     1441 aacgctctca gagcctctca ggcggtgcac gcaacagatg ttatggtaaa tcctagttat
     1501 ttgcaggcat aaaaaagccg ccttttaggc ggttttttct gattgtaagt tatcaagacc
     1561 ggatgctgaa cggcagtatc agacaataaa gcgatcgacc agcgtggaca tcgcttcaga
     1621 ctggccgtcc agcatctggc tggcgctcgc cgcctgagag accagcgctg cgttttgctg
     1681 agtgacctgc tccagctgat tcagtgcctg atgcacctgc gacacgccaa gcgactgctc
     1741 attcgccgca cgggcaatat cgctcacgta ctgtttcatc cgcccggtat tttccgccgc
     1801 tgctttcagc gcggtgccgg acgcggtgac tcgtgctacc ccttcgccaa tcttatccat
     1861 attctggtta atcagctcac ggatctgact ggcctctcgt gcacagcgct gggaaaggtt
     1921 acgcacctcc gtcgccacta ccgcaaagcc tttgccaagc tcaccggcac gtgccgcttc
     1981 aacggcggcg ttaagcgcca gcaagttggt ctggaaagaa atctcatcaa ttgacgcaac
     2041 aatctgggaa atctgctcgc tggaagaacg aatttccgcc atgctctgac tggcctcgtt
     2101 agagacgcga ttagcttcca gtacgtcccg ctccatcgaa tgtatcagac gctccgcctc
     2161 gctggcgtta tcggcggtct gggtgatcgc agtagaaatc tgctccatgc tggcggccgt
     2221 ttccacaatc gatgccgcct gttcatccgt acgctgggcc agatcctgat taccggcagc
     2281 gatatcacta ctggcgctac gcaacaccac cgcaccggac ttaatttctt gcacgatatg
     2341 ctgaatattc tcaatcgctt ggttataggc acggttcagg gctgagagct cgtcgctgcc
     2401 ggggacgtca agacgacgtg tcaggtcgcc gtccatctct gcgatggttt tcagcgtacc
     2461 gttcagttgc tgctggatac tgcgtgccac catcaccgca aaggcgatag caatcagtag
     2521 ggcaaccagg ctgattacca ggaaggactg ccagtcgaca cgggcattgt gggcaagcag
     2581 cgcagcatgt tcctgcaagg catccaccgc gcgattttcc accttttgca gcgtttcaat
     2641 acgctgggtc tgaaggttaa accagtcagt cgggttgact ccaaatccgc cttcggcggc
     2701 tttattaaaa gccgtctccc gcagttcaag agcacgagtt gcttcagcgg actgaagaga
     2761 tttgtccagc tcagccgcct gcacaggtgt gctaaagctg cgagctgccg tcagccaggc
     2821 atcctgctgg cctaccacat cgctaaacat gctgaactgg ccgtcgtcaa agcgatccat
     2881 cgagaagata ttggacagca gcgcacgttc tacaccagcc tgctccttca aattcaagag
     2941 actataataa gccgccagtt cgttcaccat cgagcctgag gtgcttaaat gccccatccc
     3001 gccgacaaac ttcagcacgt cagagatggt ttgggtatag aactgactcg cttttggtga
     3061 atcgatagtt aattcgctga tggcggtacg ggttgagtcg agaaactgaa tactttcatt
     3121 aaacgttttc aggggggcgg caatatttcc ctggagtaaa tccttattcg tatcggtcag
     3181 caaccgctta aatgttgcca gcaccttgtc ggttaactgc cgctgggcag ctaagtcatc
     3241 gcgaaacttt tggccgcgcg cgccgataaa tccagcgctc attccacgtt cgctctggag
     3301 ttgatgcacc acatcacccg cgctgcgggc gagcgtggtg agctgtccaa tggtgttcat
     3361 ctgctgttcg gtattgatac ggctgacaat acccgaaccg gcgaaccaga ccaaggcaag
     3421 cagtagcggg aataatgcaa taaacaactt catttgcatt gaaatacgat aagcccatga
     3481 catatcgata ctttccttac tttcttgagg gatcgcagga gtatcggtag atacatgcat
     3541 aaactttata gtttattgtt gggggaacgg gcaccacatt cggcagtggc gctggtagca
     3601 atccataaag gatcttcttg agatcctttg acgatcgtcg taatctcttg ctctgtaaac
     3661 gaaaaaacca cccttgcagg tggtttttcg aaggttagat aatcctggca gattctctaa
     3721 ccgtggtaac agtcttgtgc gagacatgtc accaaatttg tccttctagt gtagcctcag
     3781 tcaggccact acttcaagaa ctctcgatac atctctcgca catcctgttt
//
