LOCUS       NZ_CP125206             4052 bp    DNA     circular CON 09-APR-2024
DEFINITION  Klebsiella pneumoniae strain 50 plasmid unnamed3, complete sequence.
ACCESSION   NZ_CP125206
VERSION     NZ_CP125206.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN33790390
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4052)
  AUTHORS   Konanov,D.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2023) Laboratory of Mathematical Biology and
            Bioinformatics, Research Institute for Systems Biology and Medicine,
            Nauchniy Proezd, Moscow 117246, Russia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Representation             :: Full
            Expected Final Version            :: No
            Genome Coverage                   :: 111x
            Sequencing Technology             :: Illumina; Oxford Nanopore
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_038010585.1-RS_2024_04_08
            Annotation Date                   :: 04/08/2024 16:08:23
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5
            CDSs (total)                      :: 5
            Genes (coding)                    :: 4
            CDSs (with protein)               :: 4
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP125206.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4052
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="50"
                     /db_xref="taxon:573"
                     /plasmid="unnamed3"
                     /geo_loc_name="Russia"
                     /collection_date="2022"
     gene            909..1367
                     /locus_tag="P4G27_RS00005"
                     /old_locus_tag="P4G27_28845"
     CDS             909..1367
                     /locus_tag="P4G27_RS00005"
                     /old_locus_tag="P4G27_28845"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016245712.1"
                     /translation="MIETTLLAVLTGALSNLTSDAIKGIIGKLASKHPEVEQQASLLET
                     PLPFDEVDKLFSQMQGAIQAAAANGEIQLDGAELKALSGIKFDHQAGTVLINGSQVQAS
                     ILVTGGGQHATGKTIIQGDTTMTSQGTSIKMSGGAQIVMTGGARIIQN"
                     /name="hypothetical protein"
     gene            complement(1875..2087)
                     /locus_tag="P4G27_RS00010"
                     /old_locus_tag="P4G27_28850"
     CDS             complement(1875..2087)
                     /locus_tag="P4G27_RS00010"
                     /old_locus_tag="P4G27_28850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2091..2576)
                     /locus_tag="P4G27_RS00015"
                     /old_locus_tag="P4G27_28855"
     CDS             complement(2091..2576)
                     /locus_tag="P4G27_RS00015"
                     /old_locus_tag="P4G27_28855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_180160425.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIAMSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEKKLSCVKVNAKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2614..3291)
                     /locus_tag="P4G27_RS00020"
                     /pseudo=""
     CDS             complement(<2614..3291)
                     /locus_tag="P4G27_RS00020"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3254..3595)
                     /locus_tag="P4G27_RS00025"
                     /old_locus_tag="P4G27_28865"
     CDS             complement(3254..3595)
                     /locus_tag="P4G27_RS00025"
                     /old_locus_tag="P4G27_28865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006122514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_057172823.1"
                     /translation="MADKRNKMLTMWVTEDEHRRLLERCDGRQLAAWMRQSCLDEKPAR
                     ACRLPSISPALLRQLAGMGNNLNQIARKVNAVGAGHDRVQIVAALMAIDAGLERLRHAV
                     LEKGGDDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(3683..3862)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.407"
                     /coverage="83.0"
                     /evalue="1.57e-69"
     Typing          2..491
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.436"
                     /coverage="96.0"
                     /evalue="6.33e-132"
     Typing          3839..4052
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="81.651"
                     /coverage="93.0"
                     /evalue="3.29e-40"
     Typing          complement(1760..3264)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="94.024"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggactataaa gatcccaggc gtttccccct ggtagctccc tcgtgcgctc tcctgttcct
       61 gccattcggt ttaccggtgt cattccgctg ttatggccgc gtttgtctca ttccacgcct
      121 gacactcagt tccgggtagg cagttcgctc caagctggac tgtatgcacg atccccccgt
      181 tcagtccgac taccacgctc ttttcggtaa ctatcgtctt gagtccaacc cgaaaaggca
      241 cgacaaatcg ccattggcag tagccactgg taaacaggat gtgcgagaga tgtattcaga
      301 gttcttgaag tggtggcctt actgcggcta cactggaagg acagctttgg tgacatgtct
      361 cgcacaagac tgttaccacg gttagtaaat ctgccaggat taactaacct tcgaaaaacc
      421 acctgccagg gtggtttttt cgtttacaga gcaaaagact acgctcagaa agagattatc
      481 tcaagaagat catctctttc tcttactcaa gtcaaagcaa aaaaacacca ctccatcaca
      541 aactcaggtt atagtcggta tgcaactaat aacactgtaa tttctgtgca aaatcgaggt
      601 tatgcatatg caaatcaaca tcaactgcaa gagtatccca acatctttcg atgttgtctg
      661 ctcgaattgt gaatggaccg gcgtggctac attagattat ccggaaaacg taaaaaccct
      721 atctgtcgga ggagaaataa atttcactca taatgacgag acgccaaaat gtccacaatg
      781 tagcgttgga tatatatatg gtaaaagtgg cacttataaa cgtaatagtg caactaacca
      841 tatggacaga atcggagatt ataaagagta aataatacgc atcacagcaa tctaacgagg
      901 gaaatataat gattgaaacc acactacttg ccgttctcac tggcgcatta agcaatctta
      961 cttctgatgc aatcaaaggc atcataggga agttagcaag taaacatcct gaagttgaac
     1021 aacaagcctc actgcttgaa acaccattac cttttgacga agttgataaa ttattttctc
     1081 agatgcaggg ggccattcag gctgcagcag ccaatggtga aattcagcta gatggagctg
     1141 aattaaaagc attgagcgga ataaaatttg atcaccaagc cggaactgtt ttgataaatg
     1201 gatctcaagt acaagcgtca attttagtca ctggtggagg tcaacatgct actggaaaaa
     1261 cgatcataca aggtgatacg acaatgacta gccagggtac aagtataaaa atgtcaggtg
     1321 gtgctcaaat agtaatgact ggtggagccc gaatcattca gaactaatat gatttaccat
     1381 aacatctctt gcccgcaccg ctccggacat gttcgtcaca aacggggcgg cagtcaggta
     1441 aaaccggcaa caaaccaccc gatacaccgc cccgttcgtg acagataaat tttacccggc
     1501 tgcatggtca tgcagccaga tgcatacggt ctgatttcag gccagaatct ggatgaacgc
     1561 cttaaaaaca ggaaaatgct tctccagcca gtcccagatc tccagcgcca tgtacaggca
     1621 gttcagcacc gtctcaatca cgttaaacag tctcataatc cctccgttgt atacgccgtg
     1681 atgttttcat cacgaccgta tttagcggga aatttatgag cccttcttcg tggggtttgt
     1741 cactggtgaa gcctgtcagc ccagcgtcgg accgttatag ctccgctgac gggaacgggc
     1801 ttccgccagc tctttttcgt gctgtcgctg ctcgtatgcc cgttcggcgg ccaccgccat
     1861 ttcatgccgc tgcactactg gctcaaacgc tgtaactgcc tgctcaagtt cgccacctgc
     1921 tgactcaagc gcgtgacgcg ctcgttcagc gccgcgttct cccgttgcat aagaccagac
     1981 atcttctgcc attccgcgaa ggcgctctcc cactcgtcca gcctttgcga gtagtcctga
     2041 tgtagctgct ctaatgcggt cagcaactgt ttttccagtt ccgtcatggg ctatttcctc
     2101 tccagtacca tccagttccc ttcctccccg taagctcccg ctttcgcgtt cactttgacg
     2161 caggacagtt tcttctcccc gcagagcgac agctgaacgc cgtggttttt ctccgacaac
     2221 atggcctgcg tccgctcctg cgcccggata gtctggtaat tcccggtgat ctgctgcccc
     2281 tgccaccaca gaatgctccc gctcatggcg atcagcagta ccgagaccag ggtgatggtc
     2341 agccacgtcc ggccgaccat acgcagcacg ctcaggcggt tcgactgcat cgccgcggtc
     2401 ataccctgct cgtgggcgct gatggcgtcg ctgattctct tcgcgcttgc gctcagttcc
     2461 gcttttacag atttctcgtg ctcgctgaat gcggctttca gcatctcgcc ggtactctgc
     2521 tgctgcgctt tcgattgctg ctccaagtcc ttcgccagcg ctaaaagact gctcataaat
     2581 ggctcccttc agtcggatgt ttcgcccccc gtccgggtcg gcaatgctga tactgttttt
     2641 tgtagtgcgg accacctcaa aacctgccgc tgtgagcgca cctgtgacgt cctcgcgagt
     2701 tttgagctcc ccggatgagg ctaaggccag caacccacgt gtaatcgcct gagcggcttc
     2761 cagcttcgtt tccggcagtg cggacggcgt aaccagtaac cgccggttct ccggggcgtt
     2821 tggatcatgc agtcccagtc tgccgttcac cacggtctgc caggcatcga tgcgcggccg
     2881 gtcggcgcga tcgtaatacg gctgcaggcg tttcccggtc agcagttcag tgttggggat
     2941 caggaaattc agctccagcc gccccttgtc ggtgtgctcc acccacagaa tgctgtactg
     3001 gtctttatcg agcccgggca tcagaacccg ctcaaagctg gccatgatct gctcccgctg
     3061 cccgggcagc agttcagcct ccgcgaacga cagcacgccg gaggtgtact ttttcgcata
     3121 cggcgaggca tcgataagct cccggacttc ctccggtttt ccctgcagca cggtcgcccc
     3181 ctcgcgctgc cggtcttttc ccagcaggta atccaccgga ccggcaccac caccgcgccc
     3241 ccggggatga aatttaacga tcatcatccc cccctttttc cagcaccgca tgccgcagcc
     3301 gctccagtcc cgcgtctatt gccatcaggg cggccacaat ctgcacccga tcatgaccgg
     3361 caccaacggc attcactttc cgggcgatct ggttcaggtt gttacccata ccggcaagct
     3421 ggcgcagcag cgccggcgat attgacggca gtctgcaggc acgcgccggc ttctcatcga
     3481 ggcaggactg acgcatccac gccgccagct gcctgccgtc gcaccgctcg agcagccgcc
     3541 ggtgttcgtc ttccgtcacc cacatcgtga gcatcttgtt gcgtttgtct gccagagtag
     3601 cctcctgata acaccgggac gggcgggaaa tgtttcccgg tcggcacggt gttggacaag
     3661 ccgcaggcgc gtcagtggct tttagcgggt ttcggggcgc agccctgaac cagtcacgta
     3721 gcgctagcgg agtgtatact ggctaaatat gttacggcgg agtggtaatg tatgaaagtg
     3781 cttcatgtgg gaaggggaaa atgtggctga cgggcgtaag tgcaacatgc tggtaaaggt
     3841 gaaatgacgc ctcctcgctc actcagtcgc tgcgctcctg ccgtgagact gcggcgggcg
     3901 ttaccagctc acagatgacg ggatacgcaa gcagcgctca aatcaggaga agccgggaag
     3961 aggatgcggc gttgccgttt ttccataggc tccgcccccc tgacgagtat cataaaatct
     4021 gacgctcaaa tcagtggtgg cgaaacccga ca
//
